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Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures.

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Title: Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures.
Authors: Rausch T; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.; European Molecular Biology Laboratory (EMBL), GeneCore, Heidelberg, Germany., Snajder R; Division of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.; Faculty for Biosciences, Heidelberg University, Heidelberg, Germany.; HIDSS4Health, Helmholtz Information and Data Science School for Health, Heidelberg, Germany., Leger A; European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Simovic M; Group 'Genome Instability in Tumors,' German Cancer Research Center (DKFZ), Heidelberg, Germany., Giurgiu M; Experimental and Clinical Research Center (ECRC) of the Max Delbrück Center (MDC) and Charité-Universitätsmedizin, Berlin, Germany.; Freie Universität Berlin, Berlin, Germany., Villacorta L; European Molecular Biology Laboratory (EMBL), GeneCore, Heidelberg, Germany., Henssen AG; Department of Pediatric Oncology/Hematology, Charité-Universitätsmedizin, Berlin, Germany.; Experimental and Clinical Research Center (ECRC) of the Max Delbrück Center (MDC) and Charité-Universitätsmedizin, Berlin, Germany.; German Cancer Consortium (DKTK), partner site Berlin, and German Cancer Research Center (DKFZ), Heidelberg, Germany., Fröhling S; National Center for Tumor Diseases (NCT), Heidelberg, Germany.; German Cancer Research Center (DKFZ), Heidelberg, Germany.; German Cancer Consortium (DKTK), Heidelberg, Germany., Stegle O; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.; Division of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.; Wellcome Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK., Birney E; European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Bonder MJ; Division of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany., Ernst A; Group 'Genome Instability in Tumors,' German Cancer Research Center (DKFZ), Heidelberg, Germany., Korbel JO; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.; European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Bridging Research Division on Mechanisms of Genomic Variation and Data Science, DKFZ, Heidelberg, Germany.
Source: Cell genomics [Cell Genom] 2023 Mar 22; Vol. 3 (4), pp. 100281. Date of Electronic Publication: 2023 Mar 22 (Print Publication: 2023).
Publication Type: Journal Article
Journal Info: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: eCollection Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures.
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  Data: <searchLink fieldCode="AU" term="%22Rausch+T%22">Rausch T</searchLink>; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.; European Molecular Biology Laboratory (EMBL), GeneCore, Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Snajder+R%22">Snajder R</searchLink>; Division of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.; Faculty for Biosciences, Heidelberg University, Heidelberg, Germany.; HIDSS4Health, Helmholtz Information and Data Science School for Health, Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Leger+A%22">Leger A</searchLink>; European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Simovic+M%22">Simovic M</searchLink>; Group 'Genome Instability in Tumors,' German Cancer Research Center (DKFZ), Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Giurgiu+M%22">Giurgiu M</searchLink>; Experimental and Clinical Research Center (ECRC) of the Max Delbrück Center (MDC) and Charité-Universitätsmedizin, Berlin, Germany.; Freie Universität Berlin, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Villacorta+L%22">Villacorta L</searchLink>; European Molecular Biology Laboratory (EMBL), GeneCore, Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Henssen+AG%22">Henssen AG</searchLink>; Department of Pediatric Oncology/Hematology, Charité-Universitätsmedizin, Berlin, Germany.; Experimental and Clinical Research Center (ECRC) of the Max Delbrück Center (MDC) and Charité-Universitätsmedizin, Berlin, Germany.; German Cancer Consortium (DKTK), partner site Berlin, and German Cancer Research Center (DKFZ), Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Fröhling+S%22">Fröhling S</searchLink>; National Center for Tumor Diseases (NCT), Heidelberg, Germany.; German Cancer Research Center (DKFZ), Heidelberg, Germany.; German Cancer Consortium (DKTK), Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Stegle+O%22">Stegle O</searchLink>; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.; Division of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.; Wellcome Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Birney+E%22">Birney E</searchLink>; European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Bonder+MJ%22">Bonder MJ</searchLink>; Division of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Ernst+A%22">Ernst A</searchLink>; Group 'Genome Instability in Tumors,' German Cancer Research Center (DKFZ), Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Korbel+JO%22">Korbel JO</searchLink>; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.; European Molecular Biology Laboratory (EMBL), European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Bridging Research Division on Mechanisms of Genomic Variation and Data Science, DKFZ, Heidelberg, Germany.
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  Data: <searchLink fieldCode="JN" term="%229918284260106676%22">Cell genomics</searchLink> [Cell Genom] 2023 Mar 22; Vol. 3 (4), pp. 100281. <i>Date of Electronic Publication: </i>2023 Mar 22 (<i>Print Publication: </i>2023).
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Elsevier%2C+Inc%22">Elsevier, Inc </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>9918284260106676 <i>Publication Model: </i>eCollection <i>Cited Medium: </i>Internet <i>ISSN: </i>2666-979X (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%222666979X%22">2666979X </searchLink><i>NLM ISO Abbreviation: </i>Cell Genom <i>Subsets: </i>PubMed not MEDLINE
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              Text: 2023 Mar 22
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