A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida).
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| Title: | A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). |
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| Authors: | Gomes-Dos-Santos A; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal., Froufe E; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal., Pfeiffer JM; National Museum of Natural History, Smithsonian Institution, Washington, District of Columbia, USA., Johnson NA; U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, Florida, USA., Smith CH; Department of Integrative Biology, University of Texas, Austin, Texas, USA., Machado AM; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal., C Castro LF; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal., Do VT; Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Ha Noi, Vietnam.; Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Vietnam., Hattori A; Matsuyama High School, Saitama, Japan., Garrison N; School of Fisheries, Aquaculture, and Aquatic Sciences, College of Agriculture, Auburn University, Auburn, Alabama, USA., Whelan NV; School of Fisheries, Aquaculture, and Aquatic Sciences, College of Agriculture, Auburn University, Auburn, Alabama, USA.; Southeast Conservation Genetics Lab, Warm Springs Fish Technology Center, U.S. Fish and Wildlife Service, Auburn, Alabama, USA., Bolotov IN; N. Laverov Federal Center for Integrated Arctic Research of the Ural Branch of the Russian Academy of Sciences, Arkhangelsk, Russia., Vikhrev IV; N. Laverov Federal Center for Integrated Arctic Research of the Ural Branch of the Russian Academy of Sciences, Arkhangelsk, Russia., Kondakov AV; N. Laverov Federal Center for Integrated Arctic Research of the Ural Branch of the Russian Academy of Sciences, Arkhangelsk, Russia., Ghamizi M; Department of Biology, Natural History Museum of Marrakech, University of Cadi Ayyad, Marrakech, Morocco., Prié V; Institute of Systematics, Evolution, Biodiversity (ISYEB), National Museum of Natural History (MNHN), CNRS, SU, EPHE, UA, CP-51, Paris, France.; CIBIO/InBIO-Research Center in Biodiversity and Genetic Resources, Universidade do Porto, Vairão, Portugal., Bogan AE; North Carolina Museum of Natural Sciences, Raleigh, North Carolina, USA., Lopes Lima M; CIBIO/InBIO-Research Center in Biodiversity and Genetic Resources, Universidade do Porto, Vairão, Portugal.; IUCN SSC Mollusc Specialist Group, c/o IUCN, Cambridge, UK. |
| Source: | Molecular ecology resources [Mol Ecol Resour] 2023 Aug; Vol. 23 (6), pp. 1403-1422. Date of Electronic Publication: 2023 Apr 24. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Blackwell Country of Publication: England NLM ID: 101465604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1755-0998 (Electronic) Linking ISSN: 1755098X NLM ISO Abbreviation: Mol Ecol Resour Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 37092367 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Gomes-Dos-Santos+A%22">Gomes-Dos-Santos A</searchLink>; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal.<br /><searchLink fieldCode="AU" term="%22Froufe+E%22">Froufe E</searchLink>; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.<br /><searchLink fieldCode="AU" term="%22Pfeiffer+JM%22">Pfeiffer JM</searchLink>; National Museum of Natural History, Smithsonian Institution, Washington, District of Columbia, USA.<br /><searchLink fieldCode="AU" term="%22Johnson+NA%22">Johnson NA</searchLink>; U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, Florida, USA.<br /><searchLink fieldCode="AU" term="%22Smith+CH%22">Smith CH</searchLink>; Department of Integrative Biology, University of Texas, Austin, Texas, USA.<br /><searchLink fieldCode="AU" term="%22Machado+AM%22">Machado AM</searchLink>; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal.<br /><searchLink fieldCode="AU" term="%22C+Castro+LF%22">C Castro LF</searchLink>; CIIMAR/CIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal.<br /><searchLink fieldCode="AU" term="%22Do+VT%22">Do VT</searchLink>; Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Ha Noi, Vietnam.; Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Vietnam.<br /><searchLink fieldCode="AU" term="%22Hattori+A%22">Hattori A</searchLink>; Matsuyama High School, Saitama, Japan.<br /><searchLink fieldCode="AU" term="%22Garrison+N%22">Garrison N</searchLink>; School of Fisheries, Aquaculture, and Aquatic Sciences, College of Agriculture, Auburn University, Auburn, Alabama, USA.<br /><searchLink fieldCode="AU" term="%22Whelan+NV%22">Whelan NV</searchLink>; School of Fisheries, Aquaculture, and Aquatic Sciences, College of Agriculture, Auburn University, Auburn, Alabama, USA.; Southeast Conservation Genetics Lab, Warm Springs Fish Technology Center, U.S. Fish and Wildlife Service, Auburn, Alabama, USA.<br /><searchLink fieldCode="AU" term="%22Bolotov+IN%22">Bolotov IN</searchLink>; N. Laverov Federal Center for Integrated Arctic Research of the Ural Branch of the Russian Academy of Sciences, Arkhangelsk, Russia.<br /><searchLink fieldCode="AU" term="%22Vikhrev+IV%22">Vikhrev IV</searchLink>; N. Laverov Federal Center for Integrated Arctic Research of the Ural Branch of the Russian Academy of Sciences, Arkhangelsk, Russia.<br /><searchLink fieldCode="AU" term="%22Kondakov+AV%22">Kondakov AV</searchLink>; N. Laverov Federal Center for Integrated Arctic Research of the Ural Branch of the Russian Academy of Sciences, Arkhangelsk, Russia.<br /><searchLink fieldCode="AU" term="%22Ghamizi+M%22">Ghamizi M</searchLink>; Department of Biology, Natural History Museum of Marrakech, University of Cadi Ayyad, Marrakech, Morocco.<br /><searchLink fieldCode="AU" term="%22Prié+V%22">Prié V</searchLink>; Institute of Systematics, Evolution, Biodiversity (ISYEB), National Museum of Natural History (MNHN), CNRS, SU, EPHE, UA, CP-51, Paris, France.; CIBIO/InBIO-Research Center in Biodiversity and Genetic Resources, Universidade do Porto, Vairão, Portugal.<br /><searchLink fieldCode="AU" term="%22Bogan+AE%22">Bogan AE</searchLink>; North Carolina Museum of Natural Sciences, Raleigh, North Carolina, USA.<br /><searchLink fieldCode="AU" term="%22Lopes+Lima+M%22">Lopes Lima M</searchLink>; CIBIO/InBIO-Research Center in Biodiversity and Genetic Resources, Universidade do Porto, Vairão, Portugal.; IUCN SSC Mollusc Specialist Group, c/o IUCN, Cambridge, UK. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22101465604%22">Molecular ecology resources</searchLink> [Mol Ecol Resour] 2023 Aug; Vol. 23 (6), pp. 1403-1422. <i>Date of Electronic Publication: </i>2023 Apr 24. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Blackwell%22">Blackwell </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101465604 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1755-0998 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%221755098X%22">1755098X </searchLink><i>NLM ISO Abbreviation: </i>Mol Ecol Resour <i>Subsets: </i>MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=37092367 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1111/1755-0998.13802 Languages: – Code: eng Text: English PhysicalDescription: Pagination: StartPage: 1403 Titles: – TitleFull: A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Gomes-Dos-Santos A – PersonEntity: Name: NameFull: Froufe E – PersonEntity: Name: NameFull: Pfeiffer JM – PersonEntity: Name: NameFull: Johnson NA – PersonEntity: Name: NameFull: Smith CH – PersonEntity: Name: NameFull: Machado AM – PersonEntity: Name: NameFull: C Castro LF – PersonEntity: Name: NameFull: Do VT – PersonEntity: Name: NameFull: Hattori A – PersonEntity: Name: NameFull: Garrison N – PersonEntity: Name: NameFull: Whelan NV – PersonEntity: Name: NameFull: Bolotov IN – PersonEntity: Name: NameFull: Vikhrev IV – PersonEntity: Name: NameFull: Kondakov AV – PersonEntity: Name: NameFull: Ghamizi M – PersonEntity: Name: NameFull: Prié V – PersonEntity: Name: NameFull: Bogan AE – PersonEntity: Name: NameFull: Lopes Lima M IsPartOfRelationships: – BibEntity: Dates: – D: 01 M: 08 Text: 2023 Aug Type: published Y: 2023 Identifiers: – Type: issn-electronic Value: 1755-0998 Numbering: – Type: volume Value: 23 – Type: issue Value: 6 Titles: – TitleFull: Molecular ecology resources Type: main |
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