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The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.

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Title: The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.
Authors: Reese F; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA., Balderrama-Gutierrez G; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Wyman D; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Çelik MH; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Rebboah E; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Rezaie N; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Trout D; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA., Razavi-Mohseni M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; McKusick-Nathans Department of Genetic Medicine, Johns Hopkins University, Baltimore, USA., Jiang Y; Program in Computational Biology and Bioinformatics, Yale University, New Haven, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, USA., Borsari B; Program in Computational Biology and Bioinformatics, Yale University, New Haven, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, USA.; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain., Morabito S; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Liang HY; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., McGill CJ; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Rahmanian S; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Sakr J; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; Department of Pharmaceutical Sciences, University of California, Irvine, Irvine, USA., Jiang S; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Zeng W; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Carvalho K; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Weimer AK; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Dionne LA; The Jackson Laboratory, The Jackson Laboratory, Bar Harbor, USA., McShane A; Cellular and Molecular Biology Program, University of Michigan, Ann Arbor, USA.; Department of Radiation Oncology, University of Michigan, Ann Arbor, USA., Bedi K; Department of Biostatistics, University of Michigan, Ann Arbor, USA.; Center for RNA Biomedicine and Rogel Cancer Center, University of Michigan, Ann Arbor, USA., Elhajjajy SI; Program in Bioinformatics and Integrative Biology, University of Massachusetts Chan Medical School, Worcester, USA., Upchurch S; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA., Jou J; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Youngworth I; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Gabdank I; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Sud P; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Jolanki O; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Strattan JS; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Kagda MS; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Snyder MP; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Hitz BC; Department of Genetics, Stanford University School of Medicine, Palo Alto, USA., Moore JE; Program in Bioinformatics and Integrative Biology, University of Massachusetts Chan Medical School, Worcester, USA., Weng Z; Program in Bioinformatics and Integrative Biology, University of Massachusetts Chan Medical School, Worcester, USA., Bennett D; Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, USA.; Department of Neurological Sciences, Rush University Medical Center, Chicago, USA., Reinholdt L; The Jackson Laboratory, The Jackson Laboratory, Bar Harbor, USA., Ljungman M; Center for RNA Biomedicine and Rogel Cancer Center, University of Michigan, Ann Arbor, USA.; Departments of Radiation Oncology and Environmental Health Sciences, University of Michigan, Ann Arbor, USA., Beer MA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; McKusick-Nathans Department of Genetic Medicine, Johns Hopkins University, Baltimore, USA., Gerstein MB; Program in Computational Biology and Bioinformatics, Yale University, New Haven, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, USA.; Section on Biomedical Informatics and Data Science, Yale University, New Haven, USA.; Department of Statistics and Data Science, Yale University, New Haven, USA.; Department of Computer Science, Yale University, New Haven, USA., Pachter L; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.; Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, USA., Guigó R; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.; Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Barcelona, Spain., Wold BJ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA., Mortazavi A; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 May 16. Date of Electronic Publication: 2023 May 16.
Publication Type: Preprint; Journal Article
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.
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