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Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.

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Title: Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
Authors: Roder AE; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA., Johnson KEE; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA., Knoll M; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA., Khalfan M; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA., Wang B; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA., Schultz-Cherry S; Department of Infectious Diseases, St Jude Children Research Hospital , Memphis, Tennessee, USA., Banakis S; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA., Kreitman A; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA., Mederos C; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA., Youn JH; Department of Laboratory Medicine, NIH , Bethesda, Maryland, USA., Mercado R; Department of Laboratory Medicine, NIH , Bethesda, Maryland, USA., Wang W; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA., Chung M; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA., Ruchnewitz D; Institute for Biological Physics, University of Cologne , Cologne, Germany., Samanovic MI; Department of Medicine, New York University Langone Vaccine Center , New York, New York, USA., Mulligan MJ; Department of Medicine, New York University Langone Vaccine Center , New York, New York, USA., Lässig M; Institute for Biological Physics, University of Cologne , Cologne, Germany., Luksza M; Department of Oncological Sciences, Icahn School of Medicine at Mount Sinai , New York, New York, USA., Das S; Department of Laboratory Medicine, NIH , Bethesda, Maryland, USA., Gresham D; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA., Ghedin E; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA.
Source: MBio [mBio] 2023 Aug 31; Vol. 14 (4), pp. e0104623. Date of Electronic Publication: 2023 Jun 30.
Publication Type: Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101519231 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2150-7511 (Electronic) NLM ISO Abbreviation: mBio Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
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  Data: <searchLink fieldCode="AU" term="%22Roder+AE%22">Roder AE</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Johnson+KEE%22">Johnson KEE</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Knoll+M%22">Knoll M</searchLink>; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Khalfan+M%22">Khalfan M</searchLink>; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Wang+B%22">Wang B</searchLink>; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Schultz-Cherry+S%22">Schultz-Cherry S</searchLink>; Department of Infectious Diseases, St Jude Children Research Hospital , Memphis, Tennessee, USA.<br /><searchLink fieldCode="AU" term="%22Banakis+S%22">Banakis S</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Kreitman+A%22">Kreitman A</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Mederos+C%22">Mederos C</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Youn+JH%22">Youn JH</searchLink>; Department of Laboratory Medicine, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Mercado+R%22">Mercado R</searchLink>; Department of Laboratory Medicine, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Wang+W%22">Wang W</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Chung+M%22">Chung M</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Ruchnewitz+D%22">Ruchnewitz D</searchLink>; Institute for Biological Physics, University of Cologne , Cologne, Germany.<br /><searchLink fieldCode="AU" term="%22Samanovic+MI%22">Samanovic MI</searchLink>; Department of Medicine, New York University Langone Vaccine Center , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Mulligan+MJ%22">Mulligan MJ</searchLink>; Department of Medicine, New York University Langone Vaccine Center , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Lässig+M%22">Lässig M</searchLink>; Institute for Biological Physics, University of Cologne , Cologne, Germany.<br /><searchLink fieldCode="AU" term="%22Luksza+M%22">Luksza M</searchLink>; Department of Oncological Sciences, Icahn School of Medicine at Mount Sinai , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Das+S%22">Das S</searchLink>; Department of Laboratory Medicine, NIH , Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Gresham+D%22">Gresham D</searchLink>; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA.<br /><searchLink fieldCode="AU" term="%22Ghedin+E%22">Ghedin E</searchLink>; Systems Genomics Section, Laboratory of Parasitic Diseases, DIR, NIAID, NIH , Bethesda, Maryland, USA.; Department of Biology, Center for Genomics and Systems Biology, New York University , New York, New York, USA.
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  Data: <searchLink fieldCode="JN" term="%22101519231%22">MBio</searchLink> [mBio] 2023 Aug 31; Vol. 14 (4), pp. e0104623. <i>Date of Electronic Publication: </i>2023 Jun 30.
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  Data: Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22American+Society+for+Microbiology%22">American Society for Microbiology </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>101519231 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2150-7511 (Electronic) <i>NLM ISO Abbreviation: </i>mBio <i>Subsets: </i>MEDLINE
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=37389439
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