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Evaluation of the contribution of shotgun metagenomics in the microbiological diagnosis of liver abscesses.

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Title: Evaluation of the contribution of shotgun metagenomics in the microbiological diagnosis of liver abscesses.
Authors: Kimseng H; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France., Rossi G; Department of Internal Medicine, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France., Danjean M; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France., Jimenez-Araya B; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France., Chaligne C; Department of Internal Medicine, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France., Galy A; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; Antimicrobial Stewardship Team, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France., Souhail B; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; Antimicrobial Stewardship Team, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France., Bert F; Department of Microbiology, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France., Leflon V; Department of Microbiology, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France., Fihman V; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France., Caillault A; INSERM U955, IMRB Institute, Créteil, France., Demontant V; NGS Platform, IMRB Institute, Créteil, France., Seng S; NGS Platform, IMRB Institute, Créteil, France., Trawinski E; NGS Platform, IMRB Institute, Créteil, France., N 'Debi M; NGS Platform, IMRB Institute, Créteil, France., Boizeau L; NGS Platform, IMRB Institute, Créteil, France., Jacquier H; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France., Ronot M; Department of Radiology, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France., Reizine E; Department of Radiology, Henri Mondor Hospital, AP-HP, Créteil, France., Le Roy V; Department of Hepatology, Henri Mondor Hospital, AP-HP, Créteil, France., Lefort A; Department of Internal Medicine, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France; IAME, UMR1137, Université Paris-Cité, Paris, France., Rodriguez C; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; INSERM U955, IMRB Institute, Créteil, France; NGS Platform, IMRB Institute, Créteil, France., Lepeule R; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; Antimicrobial Stewardship Team, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France., Woerther PL; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; NGS Platform, IMRB Institute, Créteil, France. Electronic address: paul-louis.woerther@aphp.fr.
Source: The Journal of infection [J Infect] 2023 Nov; Vol. 87 (5), pp. 365-372. Date of Electronic Publication: 2023 Aug 19.
Publication Type: Journal Article; Comparative Study; Evaluation Study
Journal Info: Publisher: W.B. Saunders Country of Publication: England NLM ID: 7908424 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-2742 (Electronic) Linking ISSN: 01634453 NLM ISO Abbreviation: J Infect Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Evaluation of the contribution of shotgun metagenomics in the microbiological diagnosis of liver abscesses.
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  Data: <searchLink fieldCode="AU" term="%22Kimseng+H%22">Kimseng H</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Rossi+G%22">Rossi G</searchLink>; Department of Internal Medicine, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France.<br /><searchLink fieldCode="AU" term="%22Danjean+M%22">Danjean M</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Jimenez-Araya+B%22">Jimenez-Araya B</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Chaligne+C%22">Chaligne C</searchLink>; Department of Internal Medicine, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France.<br /><searchLink fieldCode="AU" term="%22Galy+A%22">Galy A</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; Antimicrobial Stewardship Team, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Souhail+B%22">Souhail B</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; Antimicrobial Stewardship Team, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Bert+F%22">Bert F</searchLink>; Department of Microbiology, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France.<br /><searchLink fieldCode="AU" term="%22Leflon+V%22">Leflon V</searchLink>; Department of Microbiology, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France.<br /><searchLink fieldCode="AU" term="%22Fihman+V%22">Fihman V</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Caillault+A%22">Caillault A</searchLink>; INSERM U955, IMRB Institute, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Demontant+V%22">Demontant V</searchLink>; NGS Platform, IMRB Institute, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Seng+S%22">Seng S</searchLink>; NGS Platform, IMRB Institute, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Trawinski+E%22">Trawinski E</searchLink>; NGS Platform, IMRB Institute, Créteil, France.<br /><searchLink fieldCode="AU" term="%22N+'Debi+M%22">N 'Debi M</searchLink>; NGS Platform, IMRB Institute, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Boizeau+L%22">Boizeau L</searchLink>; NGS Platform, IMRB Institute, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Jacquier+H%22">Jacquier H</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Ronot+M%22">Ronot M</searchLink>; Department of Radiology, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France.<br /><searchLink fieldCode="AU" term="%22Reizine+E%22">Reizine E</searchLink>; Department of Radiology, Henri Mondor Hospital, AP-HP, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Le+Roy+V%22">Le Roy V</searchLink>; Department of Hepatology, Henri Mondor Hospital, AP-HP, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Lefort+A%22">Lefort A</searchLink>; Department of Internal Medicine, Beaujon Hospital, GHU AP-HP Nord-Université Paris Cité, Clichy, France; IAME, UMR1137, Université Paris-Cité, Paris, France.<br /><searchLink fieldCode="AU" term="%22Rodriguez+C%22">Rodriguez C</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; INSERM U955, IMRB Institute, Créteil, France; NGS Platform, IMRB Institute, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Lepeule+R%22">Lepeule R</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; Antimicrobial Stewardship Team, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France.<br /><searchLink fieldCode="AU" term="%22Woerther+PL%22">Woerther PL</searchLink>; Department of Microbiology, Henri Mondor Hospital, AP-HP, University of Paris-Est, Créteil, France; EA 7380 Dynamyc, EnvA, UPEC, University of Paris-Est, Créteil, France; NGS Platform, IMRB Institute, Créteil, France. Electronic address: paul-louis.woerther@aphp.fr.
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  Data: <searchLink fieldCode="JN" term="%227908424%22">The Journal of infection</searchLink> [J Infect] 2023 Nov; Vol. 87 (5), pp. 365-372. <i>Date of Electronic Publication: </i>2023 Aug 19.
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