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Performance of tumour microenvironment deconvolution methods in breast cancer using single-cell simulated bulk mixtures.

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Title: Performance of tumour microenvironment deconvolution methods in breast cancer using single-cell simulated bulk mixtures.
Authors: Tran KA; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.; School of Biomedical Sciences, Queensland University of Technology (QUT), Brisbane, QLD, 4000, Australia., Addala V; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia., Johnston RL; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia., Lovell D; School of Computer Science, Queensland University of Technology, Brisbane, QLD, 4000, Australia.; QUT Centre for Data Science, Brisbane, QLD, 4000, Australia., Bradley A; Faculty of Engineering, Queensland University of Technology, Brisbane, QLD, 4000, Australia., Koufariotis LT; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia., Wood S; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia., Wu SZ; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia., Roden D; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia., Al-Eryani G; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia., Swarbrick A; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia., Williams ED; School of Biomedical Sciences, Queensland University of Technology (QUT), Brisbane, QLD, 4000, Australia.; Australian Prostate Cancer Research Centre - Queensland (APCRC-Q) and Queensland Bladder Cancer Initiative (QBCI), Brisbane, QLD, 4000, Australia., Pearson JV; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia., Kondrashova O; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia., Waddell N; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia. Nic.waddell@qimrberghofer.edu.au.; School of Biomedical Sciences, Queensland University of Technology (QUT), Brisbane, QLD, 4000, Australia. Nic.waddell@qimrberghofer.edu.au.
Source: Nature communications [Nat Commun] 2023 Sep 16; Vol. 14 (1), pp. 5758. Date of Electronic Publication: 2023 Sep 16.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Performance of tumour microenvironment deconvolution methods in breast cancer using single-cell simulated bulk mixtures.
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  Data: <searchLink fieldCode="AU" term="%22Tran+KA%22">Tran KA</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.; School of Biomedical Sciences, Queensland University of Technology (QUT), Brisbane, QLD, 4000, Australia.<br /><searchLink fieldCode="AU" term="%22Addala+V%22">Addala V</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.<br /><searchLink fieldCode="AU" term="%22Johnston+RL%22">Johnston RL</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.<br /><searchLink fieldCode="AU" term="%22Lovell+D%22">Lovell D</searchLink>; School of Computer Science, Queensland University of Technology, Brisbane, QLD, 4000, Australia.; QUT Centre for Data Science, Brisbane, QLD, 4000, Australia.<br /><searchLink fieldCode="AU" term="%22Bradley+A%22">Bradley A</searchLink>; Faculty of Engineering, Queensland University of Technology, Brisbane, QLD, 4000, Australia.<br /><searchLink fieldCode="AU" term="%22Koufariotis+LT%22">Koufariotis LT</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.<br /><searchLink fieldCode="AU" term="%22Wood+S%22">Wood S</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.<br /><searchLink fieldCode="AU" term="%22Wu+SZ%22">Wu SZ</searchLink>; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia.<br /><searchLink fieldCode="AU" term="%22Roden+D%22">Roden D</searchLink>; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia.<br /><searchLink fieldCode="AU" term="%22Al-Eryani+G%22">Al-Eryani G</searchLink>; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia.<br /><searchLink fieldCode="AU" term="%22Swarbrick+A%22">Swarbrick A</searchLink>; Cancer Ecosystems Program, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia.; School of Clinical Medicine, Faculty of Medicine and Health, UNSW Sydney, Kensington, NSW, 2052, Australia.<br /><searchLink fieldCode="AU" term="%22Williams+ED%22">Williams ED</searchLink>; School of Biomedical Sciences, Queensland University of Technology (QUT), Brisbane, QLD, 4000, Australia.; Australian Prostate Cancer Research Centre - Queensland (APCRC-Q) and Queensland Bladder Cancer Initiative (QBCI), Brisbane, QLD, 4000, Australia.<br /><searchLink fieldCode="AU" term="%22Pearson+JV%22">Pearson JV</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.<br /><searchLink fieldCode="AU" term="%22Kondrashova+O%22">Kondrashova O</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia.<br /><searchLink fieldCode="AU" term="%22Waddell+N%22">Waddell N</searchLink>; Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia. Nic.waddell@qimrberghofer.edu.au.; School of Biomedical Sciences, Queensland University of Technology (QUT), Brisbane, QLD, 4000, Australia. Nic.waddell@qimrberghofer.edu.au.
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  Data: <searchLink fieldCode="JN" term="%22101528555%22">Nature communications</searchLink> [Nat Commun] 2023 Sep 16; Vol. 14 (1), pp. 5758. <i>Date of Electronic Publication: </i>2023 Sep 16.
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