Cyclone: an accessible pipeline to analyze, evaluate, and optimize multiparametric cytometry data.

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Title: Cyclone: an accessible pipeline to analyze, evaluate, and optimize multiparametric cytometry data.
Authors: Patel RK; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Jaszczak RG; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Im K; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States., Carey ND; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States., Courau T; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States.; UCSF Immunoprofiler Initiative, University of California San Francisco, San Francisco, CA, United States., Bunis DG; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Samad B; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Avanesyan L; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.; The Ibrahim El-Hefni Liver Biorepository at California Pacific Medical Center (IELBC), San Francisco, CA, United States.; Division of General and Transplant Hepatology, California Pacific Medical Center & Research Institute, San Francisco, CA, United States., Chew NW; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States., Stenske S; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States., Jespersen JM; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States., Publicover J; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States., Edwards AW; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Naser M; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Rao AA; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Lupin-Jimenez L; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States., Krummel MF; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States.; UCSF Immunoprofiler Initiative, University of California San Francisco, San Francisco, CA, United States., Cooper S; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.; The Ibrahim El-Hefni Liver Biorepository at California Pacific Medical Center (IELBC), San Francisco, CA, United States.; Division of General and Transplant Hepatology, California Pacific Medical Center & Research Institute, San Francisco, CA, United States., Baron JL; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.; The Ibrahim El-Hefni Liver Biorepository at California Pacific Medical Center (IELBC), San Francisco, CA, United States., Combes AJ; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States.; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Immunoprofiler Initiative, University of California San Francisco, San Francisco, CA, United States., Fragiadakis GK; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Division of Rheumatology, Department of Medicine, University of California San Francisco, San Francisco, CA, United States.
Source: Frontiers in immunology [Front Immunol] 2023 Sep 04; Vol. 14, pp. 1167241. Date of Electronic Publication: 2023 Sep 04 (Print Publication: 2023).
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Cyclone: an accessible pipeline to analyze, evaluate, and optimize multiparametric cytometry data.
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  Data: <searchLink fieldCode="AU" term="%22Patel+RK%22">Patel RK</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Jaszczak+RG%22">Jaszczak RG</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Im+K%22">Im K</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Carey+ND%22">Carey ND</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Courau+T%22">Courau T</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States.; UCSF Immunoprofiler Initiative, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Bunis+DG%22">Bunis DG</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Samad+B%22">Samad B</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Avanesyan+L%22">Avanesyan L</searchLink>; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.; 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Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Publicover+J%22">Publicover J</searchLink>; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Edwards+AW%22">Edwards AW</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Naser+M%22">Naser M</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Rao+AA%22">Rao AA</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Lupin-Jimenez+L%22">Lupin-Jimenez L</searchLink>; UCSF CoLabs, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Krummel+MF%22">Krummel MF</searchLink>; Department of Pathology, University of California San Francisco, San Francisco, CA, United States.; ImmunoX Initiative, University of California San Francisco, San Francisco, CA, United States.; UCSF Immunoprofiler Initiative, University of California San Francisco, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Cooper+S%22">Cooper S</searchLink>; UCSF Liver Center, University of California San Francisco, San Francisco, CA, United States.; The Ibrahim El-Hefni Liver Biorepository at California Pacific Medical Center (IELBC), San Francisco, CA, United States.; Division of General and Transplant Hepatology, California Pacific Medical Center & Research Institute, San Francisco, CA, United States.<br /><searchLink fieldCode="AU" term="%22Baron+JL%22">Baron JL</searchLink>; Department of Medicine, Division of Gastroenterology, University of California San Francisco, San Francisco, CA, United States.; 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  Data: <searchLink fieldCode="JN" term="%22101560960%22">Frontiers in immunology</searchLink> [Front Immunol] 2023 Sep 04; Vol. 14, pp. 1167241. <i>Date of Electronic Publication: </i>2023 Sep 04 (<i>Print Publication: </i>2023).
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