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An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies.

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Title: An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies.
Authors: Wang Y; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Lv H; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Lei R; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Yeung YH; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong SAR, China., Shen IR; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Choi D; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Teo QW; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Tan TJC; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Gopal AB; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Chen X; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Graham CS; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Wu NC; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carle Illinois College of Medicine, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Sep 14. Date of Electronic Publication: 2023 Sep 14.
Publication Type: Preprint; Journal Article
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies.
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  Data: <searchLink fieldCode="AU" term="%22Wang+Y%22">Wang Y</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Lv+H%22">Lv H</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Lei+R%22">Lei R</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Yeung+YH%22">Yeung YH</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong SAR, China.<br /><searchLink fieldCode="AU" term="%22Shen+IR%22">Shen IR</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Choi+D%22">Choi D</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Teo+QW%22">Teo QW</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Tan+TJC%22">Tan TJC</searchLink>; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Gopal+AB%22">Gopal AB</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Chen+X%22">Chen X</searchLink>; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Graham+CS%22">Graham CS</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Wu+NC%22">Wu NC</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carle Illinois College of Medicine, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
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        Value: 10.1101/2023.09.11.557288
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              Text: 2023 Sep 14
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