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Learning single-cell perturbation responses using neural optimal transport.

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Title: Learning single-cell perturbation responses using neural optimal transport.
Authors: Bunne C; Department of Computer Science, ETH Zurich, Zürich, Switzerland.; AI Center, ETH Zurich, Zürich, Switzerland., Stark SG; Department of Computer Science, ETH Zurich, Zürich, Switzerland.; AI Center, ETH Zurich, Zürich, Switzerland.; Medical Informatics Unit, University of Zurich Hospital, Zürich, Switzerland.; Swiss Institute of Bioinformatics, Zurich, Switzerland., Gut G; Department of Molecular Life Sciences, University of Zurich, Zürich, Switzerland., Del Castillo JS; Department of Molecular Life Sciences, University of Zurich, Zürich, Switzerland., Levesque M; Department of Dermatology, University of Zurich Hospital, University of Zurich, Zürich, Switzerland., Lehmann KV; Department of Computer Science, ETH Zurich, Zürich, Switzerland. kjlehmann@ukaachen.de.; Cancer Research Center Cologne-Essen, Site: Center Integrated Oncology Aachen, Aachen, Germany. kjlehmann@ukaachen.de., Pelkmans L; Department of Molecular Life Sciences, University of Zurich, Zürich, Switzerland. lucas.pelkmans@mls.uzh.ch., Krause A; Department of Computer Science, ETH Zurich, Zürich, Switzerland. krausea@ethz.ch.; AI Center, ETH Zurich, Zürich, Switzerland. krausea@ethz.ch., Rätsch G; Department of Computer Science, ETH Zurich, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.; AI Center, ETH Zurich, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.; Medical Informatics Unit, University of Zurich Hospital, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.; Swiss Institute of Bioinformatics, Zurich, Switzerland. gunnar.raetsch@inf.ethz.ch.; Department of Biology, ETH Zurich, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.
Source: Nature methods [Nat Methods] 2023 Nov; Vol. 20 (11), pp. 1759-1768. Date of Electronic Publication: 2023 Sep 28.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Bunne+C%22">Bunne C</searchLink>; Department of Computer Science, ETH Zurich, Zürich, Switzerland.; AI Center, ETH Zurich, Zürich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Stark+SG%22">Stark SG</searchLink>; Department of Computer Science, ETH Zurich, Zürich, Switzerland.; AI Center, ETH Zurich, Zürich, Switzerland.; Medical Informatics Unit, University of Zurich Hospital, Zürich, Switzerland.; Swiss Institute of Bioinformatics, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Gut+G%22">Gut G</searchLink>; Department of Molecular Life Sciences, University of Zurich, Zürich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Del+Castillo+JS%22">Del Castillo JS</searchLink>; Department of Molecular Life Sciences, University of Zurich, Zürich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Levesque+M%22">Levesque M</searchLink>; Department of Dermatology, University of Zurich Hospital, University of Zurich, Zürich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Lehmann+KV%22">Lehmann KV</searchLink>; Department of Computer Science, ETH Zurich, Zürich, Switzerland. kjlehmann@ukaachen.de.; Cancer Research Center Cologne-Essen, Site: Center Integrated Oncology Aachen, Aachen, Germany. kjlehmann@ukaachen.de.<br /><searchLink fieldCode="AU" term="%22Pelkmans+L%22">Pelkmans L</searchLink>; Department of Molecular Life Sciences, University of Zurich, Zürich, Switzerland. lucas.pelkmans@mls.uzh.ch.<br /><searchLink fieldCode="AU" term="%22Krause+A%22">Krause A</searchLink>; Department of Computer Science, ETH Zurich, Zürich, Switzerland. krausea@ethz.ch.; AI Center, ETH Zurich, Zürich, Switzerland. krausea@ethz.ch.<br /><searchLink fieldCode="AU" term="%22Rätsch+G%22">Rätsch G</searchLink>; Department of Computer Science, ETH Zurich, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.; AI Center, ETH Zurich, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.; Medical Informatics Unit, University of Zurich Hospital, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.; Swiss Institute of Bioinformatics, Zurich, Switzerland. gunnar.raetsch@inf.ethz.ch.; Department of Biology, ETH Zurich, Zürich, Switzerland. gunnar.raetsch@inf.ethz.ch.
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  Data: <searchLink fieldCode="JN" term="%22101215604%22">Nature methods</searchLink> [Nat Methods] 2023 Nov; Vol. 20 (11), pp. 1759-1768. <i>Date of Electronic Publication: </i>2023 Sep 28.
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