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Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment.

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Title: Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment.
Authors: Díaz-Gay M; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Vangara R; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Barnes M; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Wang X; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Islam SMA; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Vermes I; COSMIC, Wellcome Sanger Institute, Hinxton, Cambridgeshire CB10 1SA, United Kingdom., Duke S; COSMIC, Wellcome Sanger Institute, Hinxton, Cambridgeshire CB10 1SA, United Kingdom., Narasimman NB; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Yang T; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Jiang Z; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States., Moody S; Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, United Kingdom., Senkin S; Genetic Epidemiology Group, International Agency for Research on Cancer, 69372 Lyon, France., Brennan P; Genetic Epidemiology Group, International Agency for Research on Cancer, 69372 Lyon, France., Stratton MR; Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, United Kingdom., Alexandrov LB; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.
Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Dec 01; Vol. 39 (12).
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment.
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  Data: <searchLink fieldCode="AU" term="%22Díaz-Gay+M%22">Díaz-Gay M</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Vangara+R%22">Vangara R</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Barnes+M%22">Barnes M</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Wang+X%22">Wang X</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Islam+SMA%22">Islam SMA</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Vermes+I%22">Vermes I</searchLink>; COSMIC, Wellcome Sanger Institute, Hinxton, Cambridgeshire CB10 1SA, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Duke+S%22">Duke S</searchLink>; COSMIC, Wellcome Sanger Institute, Hinxton, Cambridgeshire CB10 1SA, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Narasimman+NB%22">Narasimman NB</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Yang+T%22">Yang T</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Jiang+Z%22">Jiang Z</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.<br /><searchLink fieldCode="AU" term="%22Moody+S%22">Moody S</searchLink>; Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Senkin+S%22">Senkin S</searchLink>; Genetic Epidemiology Group, International Agency for Research on Cancer, 69372 Lyon, France.<br /><searchLink fieldCode="AU" term="%22Brennan+P%22">Brennan P</searchLink>; Genetic Epidemiology Group, International Agency for Research on Cancer, 69372 Lyon, France.<br /><searchLink fieldCode="AU" term="%22Stratton+MR%22">Stratton MR</searchLink>; Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge CB10 1SA, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Alexandrov+LB%22">Alexandrov LB</searchLink>; Department of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA 92093, United States.; Department of Bioengineering, UC San Diego, La Jolla, CA 92093, United States.; Moores Cancer Center, UC San Diego, La Jolla, CA 92037, United States.
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        Value: 10.1093/bioinformatics/btad756
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        Text: English
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