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Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates.

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Title: Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates.
Authors: Dhaka B; School of Biology and Environmental Science, University College Dublin, Dublin D04 V1W8, Ireland.; Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland., Zimmerli M; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland., Hanhart D; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland., Moser MB; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland., Guillen-Ramirez H; School of Biology and Environmental Science, University College Dublin, Dublin D04 V1W8, Ireland.; Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland.; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.; Department of Visceral Surgery and Medicine, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland., Mishra S; Indian Institute of Science Education and Research, Mohali, India., Esposito R; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland., Polidori T; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland., Widmer M; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland., García-Pérez R; Department of Life Sciences, Barcelona Supercomputing Centre, Barcelona 08034, Spain., Julio MK; Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.; Urology Research Laboratory, Department for BioMedical Research, University of Bern, 3008, Bern, Switzerland., Pervouchine D; Center for Cellular and Molecular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia., Melé M; Department of Life Sciences, Barcelona Supercomputing Centre, Barcelona 08034, Spain., Chouvardas P; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.; Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.; Urology Research Laboratory, Department for BioMedical Research, University of Bern, 3008, Bern, Switzerland., Johnson R; School of Biology and Environmental Science, University College Dublin, Dublin D04 V1W8, Ireland.; Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland.; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.; FutureNeuro SFI Research Centre, University College Dublin, Dublin D04 V1W8, Ireland.
Source: Nucleic acids research [Nucleic Acids Res] 2024 Apr 12; Vol. 52 (6), pp. 2821-2835.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Dhaka+B%22">Dhaka B</searchLink>; School of Biology and Environmental Science, University College Dublin, Dublin D04 V1W8, Ireland.; Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland.<br /><searchLink fieldCode="AU" term="%22Zimmerli+M%22">Zimmerli M</searchLink>; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.<br /><searchLink fieldCode="AU" term="%22Hanhart+D%22">Hanhart D</searchLink>; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.<br /><searchLink fieldCode="AU" term="%22Moser+MB%22">Moser MB</searchLink>; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.<br /><searchLink fieldCode="AU" term="%22Guillen-Ramirez+H%22">Guillen-Ramirez H</searchLink>; School of Biology and Environmental Science, University College Dublin, Dublin D04 V1W8, Ireland.; Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland.; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.; Department of Visceral Surgery and Medicine, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Mishra+S%22">Mishra S</searchLink>; Indian Institute of Science Education and Research, Mohali, India.<br /><searchLink fieldCode="AU" term="%22Esposito+R%22">Esposito R</searchLink>; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.<br /><searchLink fieldCode="AU" term="%22Polidori+T%22">Polidori T</searchLink>; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.<br /><searchLink fieldCode="AU" term="%22Widmer+M%22">Widmer M</searchLink>; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.<br /><searchLink fieldCode="AU" term="%22García-Pérez+R%22">García-Pérez R</searchLink>; Department of Life Sciences, Barcelona Supercomputing Centre, Barcelona 08034, Spain.<br /><searchLink fieldCode="AU" term="%22Julio+MK%22">Julio MK</searchLink>; Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.; Urology Research Laboratory, Department for BioMedical Research, University of Bern, 3008, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Pervouchine+D%22">Pervouchine D</searchLink>; Center for Cellular and Molecular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia.<br /><searchLink fieldCode="AU" term="%22Melé+M%22">Melé M</searchLink>; Department of Life Sciences, Barcelona Supercomputing Centre, Barcelona 08034, Spain.<br /><searchLink fieldCode="AU" term="%22Chouvardas+P%22">Chouvardas P</searchLink>; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.; Department of Urology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.; Urology Research Laboratory, Department for BioMedical Research, University of Bern, 3008, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Johnson+R%22">Johnson R</searchLink>; School of Biology and Environmental Science, University College Dublin, Dublin D04 V1W8, Ireland.; Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland.; Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, Bern 3010, Switzerland.; Department for BioMedical Research, University of Bern, Bern 3008, Switzerland.; FutureNeuro SFI Research Centre, University College Dublin, Dublin D04 V1W8, Ireland.
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