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Innovative super-resolution in spatial transcriptomics: a transformer model exploiting histology images and spatial gene expression.

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Title: Innovative super-resolution in spatial transcriptomics: a transformer model exploiting histology images and spatial gene expression.
Authors: Zhao C; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA., Xu Z; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; School of Medicine, Tsinghua University, Beijing, 100084, Beijing, China., Wang X; Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, 10065, New York, USA., Tao S; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Department of Biostatistics, University of Pittsburgh, Pittsburgh, 15261, Pennsylvania, USA., MacDonald WA; Health Sciences Sequencing Core at UPMC Children's Hospital of Pittsburgh, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA., He K; Division of Pediatric Rheumatology, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA., Poholek AC; Division of Pediatric Rheumatology, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Department of Immunology , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Health Sciences Sequencing Core at UPMC Children's Hospital of Pittsburgh, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA., Chen K; Department of Medicine, University of Pittsburgh, Pittsburgh, 15213, Pennsylvania, USA., Huang H; Department of Computer Science, University of Maryland, College Park, 20742, Maryland, USA., Chen W; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Department of Biostatistics, University of Pittsburgh, Pittsburgh, 15261, Pennsylvania, USA.
Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jan 22; Vol. 25 (2).
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Innovative super-resolution in spatial transcriptomics: a transformer model exploiting histology images and spatial gene expression.
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  Data: <searchLink fieldCode="AU" term="%22Zhao+C%22">Zhao C</searchLink>; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.<br /><searchLink fieldCode="AU" term="%22Xu+Z%22">Xu Z</searchLink>; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; School of Medicine, Tsinghua University, Beijing, 100084, Beijing, China.<br /><searchLink fieldCode="AU" term="%22Wang+X%22">Wang X</searchLink>; Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, 10065, New York, USA.<br /><searchLink fieldCode="AU" term="%22Tao+S%22">Tao S</searchLink>; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Department of Biostatistics, University of Pittsburgh, Pittsburgh, 15261, Pennsylvania, USA.<br /><searchLink fieldCode="AU" term="%22MacDonald+WA%22">MacDonald WA</searchLink>; Health Sciences Sequencing Core at UPMC Children's Hospital of Pittsburgh, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.<br /><searchLink fieldCode="AU" term="%22He+K%22">He K</searchLink>; Division of Pediatric Rheumatology, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.<br /><searchLink fieldCode="AU" term="%22Poholek+AC%22">Poholek AC</searchLink>; Division of Pediatric Rheumatology, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Department of Immunology , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Health Sciences Sequencing Core at UPMC Children's Hospital of Pittsburgh, Department of Pediatrics , University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.<br /><searchLink fieldCode="AU" term="%22Chen+K%22">Chen K</searchLink>; Department of Medicine, University of Pittsburgh, Pittsburgh, 15213, Pennsylvania, USA.<br /><searchLink fieldCode="AU" term="%22Huang+H%22">Huang H</searchLink>; Department of Computer Science, University of Maryland, College Park, 20742, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Chen+W%22">Chen W</searchLink>; Department of Pediatrics, University of Pittsburgh, Pittsburgh, 15224, Pennsylvania, USA.; Department of Biostatistics, University of Pittsburgh, Pittsburgh, 15261, Pennsylvania, USA.
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  Data: <searchLink fieldCode="JN" term="%22100912837%22">Briefings in bioinformatics</searchLink> [Brief Bioinform] 2024 Jan 22; Vol. 25 (2).
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Oxford+University+Press%22">Oxford University Press </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100912837 <i>Publication Model: </i>Print <i>Cited Medium: </i>Internet <i>ISSN: </i>1477-4054 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214675463%22">14675463 </searchLink><i>NLM ISO Abbreviation: </i>Brief Bioinform <i>Subsets: </i>MEDLINE
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        Text: English
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              Text: 2024 Jan 22
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