Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion.

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Title: Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion.
Authors: Planas D; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France. delphine.planas@pasteur.fr.; Vaccine Research Institute, Créteil, France. delphine.planas@pasteur.fr., Staropoli I; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France., Michel V; Pathogenesis of Vascular Infections Unit, Institut Pasteur, INSERM, Paris, France., Lemoine F; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France.; Bioinformatics and Biostatistics Hub, Paris, France., Donati F; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France.; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France., Prot M; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France., Porrot F; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France., Guivel-Benhassine F; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France., Jeyarajah B; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France., Brisebarre A; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France., Dehan O; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France., Avon L; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France., Bolland WH; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France., Hubert M; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France., Buchrieser J; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France., Vanhoucke T; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France., Rosenbaum P; Humoral Immunology Laboratory, Institut Pasteur, Université Paris Cité, INSERM U1222, Paris, France., Veyer D; Laboratoire de Virologie, Service de Microbiologie, Hôpital Européen Georges Pompidou, Paris, France.; Functional Genomics of Solid Tumors (FunGeST), Centre de Recherche des Cordeliers, INSERM, Université de Paris, Sorbonne Université, Paris, France., Péré H; Laboratoire de Virologie, Service de Microbiologie, Hôpital Européen Georges Pompidou, Paris, France.; Functional Genomics of Solid Tumors (FunGeST), Centre de Recherche des Cordeliers, INSERM, Université de Paris, Sorbonne Université, Paris, France., Lina B; Laboratoire de Virologie, Institut des Agents Infectieux, Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France.; CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France., Trouillet-Assant S; Laboratoire de Virologie, Institut des Agents Infectieux, Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France.; CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France., Hocqueloux L; CHU d'Orléans, Service de Maladies Infectieuses, Orléans, France., Prazuck T; CHU d'Orléans, Service de Maladies Infectieuses, Orléans, France., Simon-Loriere E; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France. etienne.simon-loriere@pasteur.fr.; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France. etienne.simon-loriere@pasteur.fr., Schwartz O; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France. olivier.schwartz@pasteur.fr.; Vaccine Research Institute, Créteil, France. olivier.schwartz@pasteur.fr.
Source: Nature communications [Nat Commun] 2024 Mar 13; Vol. 15 (1), pp. 2254. Date of Electronic Publication: 2024 Mar 13.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion.
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  Data: <searchLink fieldCode="AU" term="%22Planas+D%22">Planas D</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France. delphine.planas@pasteur.fr.; Vaccine Research Institute, Créteil, France. delphine.planas@pasteur.fr.<br /><searchLink fieldCode="AU" term="%22Staropoli+I%22">Staropoli I</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France.<br /><searchLink fieldCode="AU" term="%22Michel+V%22">Michel V</searchLink>; Pathogenesis of Vascular Infections Unit, Institut Pasteur, INSERM, Paris, France.<br /><searchLink fieldCode="AU" term="%22Lemoine+F%22">Lemoine F</searchLink>; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France.; Bioinformatics and Biostatistics Hub, Paris, France.<br /><searchLink fieldCode="AU" term="%22Donati+F%22">Donati F</searchLink>; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France.; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.<br /><searchLink fieldCode="AU" term="%22Prot+M%22">Prot M</searchLink>; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France.<br /><searchLink fieldCode="AU" term="%22Porrot+F%22">Porrot F</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France.<br /><searchLink fieldCode="AU" term="%22Guivel-Benhassine+F%22">Guivel-Benhassine F</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France.<br /><searchLink fieldCode="AU" term="%22Jeyarajah+B%22">Jeyarajah B</searchLink>; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.<br /><searchLink fieldCode="AU" term="%22Brisebarre+A%22">Brisebarre A</searchLink>; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.<br /><searchLink fieldCode="AU" term="%22Dehan+O%22">Dehan O</searchLink>; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.<br /><searchLink fieldCode="AU" term="%22Avon+L%22">Avon L</searchLink>; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.<br /><searchLink fieldCode="AU" term="%22Bolland+WH%22">Bolland WH</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France.<br /><searchLink fieldCode="AU" term="%22Hubert+M%22">Hubert M</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France.<br /><searchLink fieldCode="AU" term="%22Buchrieser+J%22">Buchrieser J</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France.<br /><searchLink fieldCode="AU" term="%22Vanhoucke+T%22">Vanhoucke T</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France.<br /><searchLink fieldCode="AU" term="%22Rosenbaum+P%22">Rosenbaum P</searchLink>; Humoral Immunology Laboratory, Institut Pasteur, Université Paris Cité, INSERM U1222, Paris, France.<br /><searchLink fieldCode="AU" term="%22Veyer+D%22">Veyer D</searchLink>; Laboratoire de Virologie, Service de Microbiologie, Hôpital Européen Georges Pompidou, Paris, France.; Functional Genomics of Solid Tumors (FunGeST), Centre de Recherche des Cordeliers, INSERM, Université de Paris, Sorbonne Université, Paris, France.<br /><searchLink fieldCode="AU" term="%22Péré+H%22">Péré H</searchLink>; Laboratoire de Virologie, Service de Microbiologie, Hôpital Européen Georges Pompidou, Paris, France.; Functional Genomics of Solid Tumors (FunGeST), Centre de Recherche des Cordeliers, INSERM, Université de Paris, Sorbonne Université, Paris, France.<br /><searchLink fieldCode="AU" term="%22Lina+B%22">Lina B</searchLink>; Laboratoire de Virologie, Institut des Agents Infectieux, Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France.; CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France.<br /><searchLink fieldCode="AU" term="%22Trouillet-Assant+S%22">Trouillet-Assant S</searchLink>; Laboratoire de Virologie, Institut des Agents Infectieux, Centre National de Référence des virus des infections respiratoires, Hospices Civils de Lyon, Lyon, France.; CIRI, Centre International de Recherche en Infectiologie, Team VirPath, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, Lyon, France.<br /><searchLink fieldCode="AU" term="%22Hocqueloux+L%22">Hocqueloux L</searchLink>; CHU d'Orléans, Service de Maladies Infectieuses, Orléans, France.<br /><searchLink fieldCode="AU" term="%22Prazuck+T%22">Prazuck T</searchLink>; CHU d'Orléans, Service de Maladies Infectieuses, Orléans, France.<br /><searchLink fieldCode="AU" term="%22Simon-Loriere+E%22">Simon-Loriere E</searchLink>; G5 Evolutionary Genomics of RNA Viruses, Institut Pasteur, Université Paris Cité, Paris, France. etienne.simon-loriere@pasteur.fr.; National Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France. etienne.simon-loriere@pasteur.fr.<br /><searchLink fieldCode="AU" term="%22Schwartz+O%22">Schwartz O</searchLink>; Virus and Immunity Unit, Institut Pasteur, Université Paris Cité, CNRS UMR3569, Paris, France. olivier.schwartz@pasteur.fr.; Vaccine Research Institute, Créteil, France. olivier.schwartz@pasteur.fr.
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