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Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.

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Title: Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Authors: Paredes MI; Department of Epidemiology, University of Washington, Seattle, Washington, United States of America.; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America., Perofsky AC; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Fogarty International Center, National Institutes of Health, Bethesda, Maryland, United States of America., Frisbie L; Washington State Department of Health, Shoreline, Washington, United States of America., Moncla LH; The University of Pennsylvania, Department of Pathobiology, Philadelphia, Pennsylvania, United States of America., Roychoudhury P; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Xie H; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Bakhash SAM; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Kong K; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Arnould I; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Nguyen TV; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Wendm ST; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Hajian P; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Ellis S; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Mathias PC; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Greninger AL; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America., Starita LM; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America., Frazar CD; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America., Ryke E; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America., Zhong W; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America., Gamboa L; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America., Threlkeld M; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America., Lee J; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America., Stone J; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America., McDermot E; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America., Truong M; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America., Shendure J; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.; Howard Hughes Medical Institute, Seattle, Washington, United States of America., Oltean HN; Washington State Department of Health, Shoreline, Washington, United States of America., Viboud C; Fogarty International Center, National Institutes of Health, Bethesda, Maryland, United States of America., Chu H; Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, United States of America., Müller NF; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America., Bedford T; Department of Epidemiology, University of Washington, Seattle, Washington, United States of America.; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.; Howard Hughes Medical Institute, Seattle, Washington, United States of America.
Source: PLoS pathogens [PLoS Pathog] 2024 Mar 26; Vol. 20 (3), pp. e1012117. Date of Electronic Publication: 2024 Mar 26 (Print Publication: 2024).
Publication Type: Journal Article
Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE
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  Data: Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
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  Data: <searchLink fieldCode="AU" term="%22Paredes+MI%22">Paredes MI</searchLink>; Department of Epidemiology, University of Washington, Seattle, Washington, United States of America.; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Perofsky+AC%22">Perofsky AC</searchLink>; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Fogarty International Center, National Institutes of Health, Bethesda, Maryland, United States of America.<br /><searchLink fieldCode="AU" term="%22Frisbie+L%22">Frisbie L</searchLink>; Washington State Department of Health, Shoreline, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Moncla+LH%22">Moncla LH</searchLink>; The University of Pennsylvania, Department of Pathobiology, Philadelphia, Pennsylvania, United States of America.<br /><searchLink fieldCode="AU" term="%22Roychoudhury+P%22">Roychoudhury P</searchLink>; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Xie+H%22">Xie H</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Bakhash+SAM%22">Bakhash SAM</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Kong+K%22">Kong K</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Arnould+I%22">Arnould I</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Nguyen+TV%22">Nguyen TV</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Wendm+ST%22">Wendm ST</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Hajian+P%22">Hajian P</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Ellis+S%22">Ellis S</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Mathias+PC%22">Mathias PC</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Greninger+AL%22">Greninger AL</searchLink>; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Starita+LM%22">Starita LM</searchLink>; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Frazar+CD%22">Frazar CD</searchLink>; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Ryke+E%22">Ryke E</searchLink>; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Zhong+W%22">Zhong W</searchLink>; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Gamboa+L%22">Gamboa L</searchLink>; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Threlkeld+M%22">Threlkeld M</searchLink>; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Lee+J%22">Lee J</searchLink>; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Stone+J%22">Stone J</searchLink>; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22McDermot+E%22">McDermot E</searchLink>; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Truong+M%22">Truong M</searchLink>; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Shendure+J%22">Shendure J</searchLink>; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.; Howard Hughes Medical Institute, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Oltean+HN%22">Oltean HN</searchLink>; Washington State Department of Health, Shoreline, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Viboud+C%22">Viboud C</searchLink>; Fogarty International Center, National Institutes of Health, Bethesda, Maryland, United States of America.<br /><searchLink fieldCode="AU" term="%22Chu+H%22">Chu H</searchLink>; Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Müller+NF%22">Müller NF</searchLink>; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Bedford+T%22">Bedford T</searchLink>; Department of Epidemiology, University of Washington, Seattle, Washington, United States of America.; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, Washington, United States of America.; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.; Howard Hughes Medical Institute, Seattle, Washington, United States of America.
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