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Rosace: a robust deep mutational scanning analysis framework employing position and mean-variance shrinkage.

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Title: Rosace: a robust deep mutational scanning analysis framework employing position and mean-variance shrinkage.
Authors: Rao J; Department of Computer Science, UCLA, Los Angeles, CA, USA., Xin R; Computational and Systems Biology Interdepartmental Program, UCLA, Los Angeles, CA, USA., Macdonald C; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA., Howard MK; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.; Tetrad Graduate Program, UCSF, San Francisco, CA, USA.; Department of Pharmaceutical Chemistry, UCSF, San Francisco, CA, USA., Estevam GO; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.; Tetrad Graduate Program, UCSF, San Francisco, CA, USA., Yee SW; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA., Wang M; Department of Mathematics, Baruch College, CUNY, New York, NY, USA., Fraser JS; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.; Quantitative Biosciences Institute, UCSF, San Francisco, CA, USA., Coyote-Maestas W; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA. willow.coyote-maestas@ucsf.edu.; Quantitative Biosciences Institute, UCSF, San Francisco, CA, USA. willow.coyote-maestas@ucsf.edu., Pimentel H; Department of Computer Science, UCLA, Los Angeles, CA, USA. hjp@ucla.edu.; Department of Computational Medicine, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA. hjp@ucla.edu.; Department of Human Genetics, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA. hjp@ucla.edu.
Source: Genome biology [Genome Biol] 2024 May 24; Vol. 25 (1), pp. 138. Date of Electronic Publication: 2024 May 24.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Rosace: a robust deep mutational scanning analysis framework employing position and mean-variance shrinkage.
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  Data: <searchLink fieldCode="AU" term="%22Rao+J%22">Rao J</searchLink>; Department of Computer Science, UCLA, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Xin+R%22">Xin R</searchLink>; Computational and Systems Biology Interdepartmental Program, UCLA, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Macdonald+C%22">Macdonald C</searchLink>; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Howard+MK%22">Howard MK</searchLink>; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.; Tetrad Graduate Program, UCSF, San Francisco, CA, USA.; Department of Pharmaceutical Chemistry, UCSF, San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Estevam+GO%22">Estevam GO</searchLink>; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.; Tetrad Graduate Program, UCSF, San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Yee+SW%22">Yee SW</searchLink>; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Wang+M%22">Wang M</searchLink>; Department of Mathematics, Baruch College, CUNY, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Fraser+JS%22">Fraser JS</searchLink>; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA.; Quantitative Biosciences Institute, UCSF, San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Coyote-Maestas+W%22">Coyote-Maestas W</searchLink>; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, USA. willow.coyote-maestas@ucsf.edu.; Quantitative Biosciences Institute, UCSF, San Francisco, CA, USA. willow.coyote-maestas@ucsf.edu.<br /><searchLink fieldCode="AU" term="%22Pimentel+H%22">Pimentel H</searchLink>; Department of Computer Science, UCLA, Los Angeles, CA, USA. hjp@ucla.edu.; Department of Computational Medicine, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA. hjp@ucla.edu.; Department of Human Genetics, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA. hjp@ucla.edu.
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  Data: <searchLink fieldCode="JN" term="%22100960660%22">Genome biology</searchLink> [Genome Biol] 2024 May 24; Vol. 25 (1), pp. 138. <i>Date of Electronic Publication: </i>2024 May 24.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central+Ltd%22">BioMed Central Ltd </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100960660 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1474-760X (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214747596%22">14747596 </searchLink><i>NLM ISO Abbreviation: </i>Genome Biol <i>Subsets: </i>MEDLINE
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=38789982
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        Value: 10.1186/s13059-024-03279-7
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              Text: 2024 May 24
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