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PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.

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Title: PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.
Authors: Ghezzi H; Department of Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada., Fan YM; Department of Cellular and Physiological Sciences, University of British Columbia, Vancouver, British Columbia, Canada., Ng KM; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada., Burckhardt JC; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada., Pepin DM; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada., Lin X; Civil Engineering, The University of British Columbia, Vancouver, British Columbia, Canada., Ziels RM; Civil Engineering, The University of British Columbia, Vancouver, British Columbia, Canada., Tropini C; Department of Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada.; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada.; School of Biomedical Engineering, University of British Columbia, Vancouver, British Columbia, Canada.; Humans and the Microbiome Program, Canadian Institute for Advanced Research (CIFAR), Toronto, Ontario, Canada.
Source: MSphere [mSphere] 2024 Jul 30; Vol. 9 (7), pp. e0036024. Date of Electronic Publication: 2024 Jul 09.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101674533 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2379-5042 (Electronic) Linking ISSN: 23795042 NLM ISO Abbreviation: mSphere Subsets: MEDLINE
Database: MEDLINE Ultimate
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PubType: Academic Journal
PubTypeId: academicJournal
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  Data: PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.
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  Data: <searchLink fieldCode="AU" term="%22Ghezzi+H%22">Ghezzi H</searchLink>; Department of Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada.<br /><searchLink fieldCode="AU" term="%22Fan+YM%22">Fan YM</searchLink>; Department of Cellular and Physiological Sciences, University of British Columbia, Vancouver, British Columbia, Canada.<br /><searchLink fieldCode="AU" term="%22Ng+KM%22">Ng KM</searchLink>; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada.<br /><searchLink fieldCode="AU" term="%22Burckhardt+JC%22">Burckhardt JC</searchLink>; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada.<br /><searchLink fieldCode="AU" term="%22Pepin+DM%22">Pepin DM</searchLink>; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada.<br /><searchLink fieldCode="AU" term="%22Lin+X%22">Lin X</searchLink>; Civil Engineering, The University of British Columbia, Vancouver, British Columbia, Canada.<br /><searchLink fieldCode="AU" term="%22Ziels+RM%22">Ziels RM</searchLink>; Civil Engineering, The University of British Columbia, Vancouver, British Columbia, Canada.<br /><searchLink fieldCode="AU" term="%22Tropini+C%22">Tropini C</searchLink>; Department of Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada.; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada.; School of Biomedical Engineering, University of British Columbia, Vancouver, British Columbia, Canada.; Humans and the Microbiome Program, Canadian Institute for Advanced Research (CIFAR), Toronto, Ontario, Canada.
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  Data: <searchLink fieldCode="JN" term="%22101674533%22">MSphere</searchLink> [mSphere] 2024 Jul 30; Vol. 9 (7), pp. e0036024. <i>Date of Electronic Publication: </i>2024 Jul 09.
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        Value: 10.1128/msphere.00360-24
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      – Code: eng
        Text: English
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      – TitleFull: PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.
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              Text: 2024 Jul 30
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              Y: 2024
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