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GSearch: ultra-fast and scalable genome search by combining K-mer hashing with hierarchical navigable small world graphs.

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Title: GSearch: ultra-fast and scalable genome search by combining K-mer hashing with hierarchical navigable small world graphs.
Authors: Zhao J; Center for Bioinformatics and Computational Genomics, Georgia Institute of Technology, Atlanta, GA, USA.; School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA., Both JP; Université Paris-Saclay, CEA, List, Palaiseau, France., Rodriguez-R LM; School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA.; Department of Microbiology, University of Innsbruck, Innsbruck, Austria.; Digital Science Center (DiSC), University of Innsbruck, Innsbruck, Austria., Konstantinidis KT; Center for Bioinformatics and Computational Genomics, Georgia Institute of Technology, Atlanta, GA, USA.; School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.; School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA.
Source: Nucleic acids research [Nucleic Acids Res] 2024 Sep 09; Vol. 52 (16), pp. e74.
Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Zhao+J%22">Zhao J</searchLink>; Center for Bioinformatics and Computational Genomics, Georgia Institute of Technology, Atlanta, GA, USA.; School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.<br /><searchLink fieldCode="AU" term="%22Both+JP%22">Both JP</searchLink>; Université Paris-Saclay, CEA, List, Palaiseau, France.<br /><searchLink fieldCode="AU" term="%22Rodriguez-R+LM%22">Rodriguez-R LM</searchLink>; School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA.; Department of Microbiology, University of Innsbruck, Innsbruck, Austria.; Digital Science Center (DiSC), University of Innsbruck, Innsbruck, Austria.<br /><searchLink fieldCode="AU" term="%22Konstantinidis+KT%22">Konstantinidis KT</searchLink>; Center for Bioinformatics and Computational Genomics, Georgia Institute of Technology, Atlanta, GA, USA.; School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.; School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA.
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        Value: 10.1093/nar/gkae609
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              Text: 2024 Sep 09
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              Y: 2024
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