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Genomic insights into the 2022-2023Vibrio cholerae outbreak in Malawi.

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Title: Genomic insights into the 2022-2023Vibrio cholerae outbreak in Malawi.
Authors: Chaguza C; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, CT, USA. chrispin.chaguza@yale.edu.; Yale Institute for Global Health, Yale University, New Haven, CT, USA. chrispin.chaguza@yale.edu.; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK. chrispin.chaguza@yale.edu.; NIHR Mucosal Pathogens Research Unit, Research Department of Infection, Division of Infection and Immunity, University College London, London, UK. chrispin.chaguza@yale.edu.; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK. chrispin.chaguza@yale.edu., Chibwe I; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Chaima D; Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi., Musicha P; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi., Ndeketa L; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi., Kasambara W; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Mhango C; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi., Mseka UL; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi., Bitilinyu-Bangoh J; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Mvula B; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Kipandula W; Department of Medical Laboratory Sciences, Faculty of Biomedical Sciences and Health profession, Kamuzu University of Health Sciences, Blantyre, Malawi., Bonongwe P; Ministry of Health, Balaka District Hospital, Balaka, Machinga, Malawi., Munthali RJ; Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada., Ngwira S; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Mwendera CA; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK., Kalizang'oma A; NIHR Mucosal Pathogens Research Unit, Research Department of Infection, Division of Infection and Immunity, University College London, London, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi., Jambo KC; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, UK., Kambalame D; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Kamng'ona AW; Department of Biomedical Sciences, School of Life Sciences and Allied Health Professions, Kamuzu University of Health Sciences, Blantyre, Malawi., Steele AD; Diarrhoeal Pathogens Research Unit, Sefako Makgatho Health Sciences University, Medunsa, 0204, Pretoria, South Africa., Chauma-Mwale A; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Hungerford D; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; NIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, UK., Kagoli M; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi., Nyaga MM; Next Generation Sequencing Unit and Division of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, 9300, South Africa., Dube Q; Malawi Ministry of Health, Lilongwe, Malawi., French N; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi., Msefula CL; Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi., Cunliffe NA; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; NIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, UK.; NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, UK., Jere KC; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK. Khuzwayo.Jere@liverpool.ac.uk.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi. Khuzwayo.Jere@liverpool.ac.uk.; Department of Medical Laboratory Sciences, Faculty of Biomedical Sciences and Health profession, Kamuzu University of Health Sciences, Blantyre, Malawi. Khuzwayo.Jere@liverpool.ac.uk.; NIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, UK. Khuzwayo.Jere@liverpool.ac.uk.; NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, UK. Khuzwayo.Jere@liverpool.ac.uk.
Source: Nature communications [Nat Commun] 2024 Jul 26; Vol. 15 (1), pp. 6291. Date of Electronic Publication: 2024 Jul 26.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: Genomic insights into the 2022-2023Vibrio cholerae outbreak in Malawi.
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  Data: <searchLink fieldCode="AU" term="%22Chaguza+C%22">Chaguza C</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, CT, USA. chrispin.chaguza@yale.edu.; Yale Institute for Global Health, Yale University, New Haven, CT, USA. chrispin.chaguza@yale.edu.; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK. chrispin.chaguza@yale.edu.; NIHR Mucosal Pathogens Research Unit, Research Department of Infection, Division of Infection and Immunity, University College London, London, UK. chrispin.chaguza@yale.edu.; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK. chrispin.chaguza@yale.edu.<br /><searchLink fieldCode="AU" term="%22Chibwe+I%22">Chibwe I</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Chaima+D%22">Chaima D</searchLink>; Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Musicha+P%22">Musicha P</searchLink>; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Ndeketa+L%22">Ndeketa L</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Kasambara+W%22">Kasambara W</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Mhango+C%22">Mhango C</searchLink>; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Mseka+UL%22">Mseka UL</searchLink>; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Bitilinyu-Bangoh+J%22">Bitilinyu-Bangoh J</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Mvula+B%22">Mvula B</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Kipandula+W%22">Kipandula W</searchLink>; Department of Medical Laboratory Sciences, Faculty of Biomedical Sciences and Health profession, Kamuzu University of Health Sciences, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Bonongwe+P%22">Bonongwe P</searchLink>; Ministry of Health, Balaka District Hospital, Balaka, Machinga, Malawi.<br /><searchLink fieldCode="AU" term="%22Munthali+RJ%22">Munthali RJ</searchLink>; Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada.<br /><searchLink fieldCode="AU" term="%22Ngwira+S%22">Ngwira S</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Mwendera+CA%22">Mwendera CA</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.<br /><searchLink fieldCode="AU" term="%22Kalizang'oma+A%22">Kalizang'oma A</searchLink>; NIHR Mucosal Pathogens Research Unit, Research Department of Infection, Division of Infection and Immunity, University College London, London, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Jambo+KC%22">Jambo KC</searchLink>; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, UK.<br /><searchLink fieldCode="AU" term="%22Kambalame+D%22">Kambalame D</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Kamng'ona+AW%22">Kamng'ona AW</searchLink>; Department of Biomedical Sciences, School of Life Sciences and Allied Health Professions, Kamuzu University of Health Sciences, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Steele+AD%22">Steele AD</searchLink>; Diarrhoeal Pathogens Research Unit, Sefako Makgatho Health Sciences University, Medunsa, 0204, Pretoria, South Africa.<br /><searchLink fieldCode="AU" term="%22Chauma-Mwale+A%22">Chauma-Mwale A</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Hungerford+D%22">Hungerford D</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; NIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, UK.<br /><searchLink fieldCode="AU" term="%22Kagoli+M%22">Kagoli M</searchLink>; Public Health Institute of Malawi, Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22Nyaga+MM%22">Nyaga MM</searchLink>; Next Generation Sequencing Unit and Division of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, 9300, South Africa.<br /><searchLink fieldCode="AU" term="%22Dube+Q%22">Dube Q</searchLink>; Malawi Ministry of Health, Lilongwe, Malawi.<br /><searchLink fieldCode="AU" term="%22French+N%22">French N</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Msefula+CL%22">Msefula CL</searchLink>; Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Cunliffe+NA%22">Cunliffe NA</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.; NIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, UK.; NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, UK.<br /><searchLink fieldCode="AU" term="%22Jere+KC%22">Jere KC</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK. Khuzwayo.Jere@liverpool.ac.uk.; Malawi-Liverpool-Wellcome Research Programme, Blantyre, Malawi. Khuzwayo.Jere@liverpool.ac.uk.; Department of Medical Laboratory Sciences, Faculty of Biomedical Sciences and Health profession, Kamuzu University of Health Sciences, Blantyre, Malawi. Khuzwayo.Jere@liverpool.ac.uk.; NIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, UK. Khuzwayo.Jere@liverpool.ac.uk.; NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, UK. Khuzwayo.Jere@liverpool.ac.uk.
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