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An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies.

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Title: An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies.
Authors: Wang Y; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Lv H; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Teo QW; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Lei R; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Gopal AB; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Ouyang WO; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Yeung YH; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong SAR, China., Tan TJC; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Choi D; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Shen IR; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Chen X; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Graham CS; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA., Wu NC; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carle Illinois College of Medicine, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA. Electronic address: nicwu@illinois.edu.
Source: Immunity [Immunity] 2024 Oct 08; Vol. 57 (10), pp. 2453-2465.e7. Date of Electronic Publication: 2024 Aug 19.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 9432918 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4180 (Electronic) Linking ISSN: 10747613 NLM ISO Abbreviation: Immunity Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies.
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  Data: <searchLink fieldCode="AU" term="%22Wang+Y%22">Wang Y</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Lv+H%22">Lv H</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Teo+QW%22">Teo QW</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Lei+R%22">Lei R</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Gopal+AB%22">Gopal AB</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Ouyang+WO%22">Ouyang WO</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Yeung+YH%22">Yeung YH</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong SAR, China.<br /><searchLink fieldCode="AU" term="%22Tan+TJC%22">Tan TJC</searchLink>; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Choi+D%22">Choi D</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Shen+IR%22">Shen IR</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Chen+X%22">Chen X</searchLink>; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Graham+CS%22">Graham CS</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.<br /><searchLink fieldCode="AU" term="%22Wu+NC%22">Wu NC</searchLink>; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA; Carle Illinois College of Medicine, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA. Electronic address: nicwu@illinois.edu.
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  Data: <searchLink fieldCode="JN" term="%229432918%22">Immunity</searchLink> [Immunity] 2024 Oct 08; Vol. 57 (10), pp. 2453-2465.e7. <i>Date of Electronic Publication: </i>2024 Aug 19.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Cell+Press%22">Cell Press </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>9432918 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1097-4180 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2210747613%22">10747613 </searchLink><i>NLM ISO Abbreviation: </i>Immunity <i>Subsets: </i>MEDLINE
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        Value: 10.1016/j.immuni.2024.07.022
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              Text: 2024 Oct 08
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