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The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice.

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Title: The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice.
Authors: Blanchard MW; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Sigmon JS; Department of Computer Science, University of North Carolina, Chapel Hill, NC 27599, USA.; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Brennan J; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Ahulamibe C; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Allen ME; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Ardery S; Genetics and Molecular Biology Curriculum, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Baric RS; Department of Epidemiology, Gillings School of Public Health, University of North Carolina, Chapel Hill, NC 27599, USA., Bell TA; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Farrington J; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Ciavatta D; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Cruz Cisneros MC; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Genetics and Molecular Biology Curriculum, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Drushal M; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Ferris MT; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Fry RC; Department of Environmental Sciences and Engineering, Gillings School of Public Health, University of North Carolina, Chapel Hill, NC 27599, USA., Gaines C; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Gu B; Department of Neuroscience, The Ohio State University, Columbus, OH 43210, USA., Heise MT; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Hock P; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Hodges RA; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Hulgin M; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Kafri T; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC 27599, USA., Lynch RM; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Magnuson T; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA., Miller DR; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Murphy CEY; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Nguyen DT; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Noll KE; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC 27599, USA., Proulx MK; Department of Microbiology, UMass Chan Medical School, Worchester, MA 01655, USA., Sassetti CM; Department of Microbiology, UMass Chan Medical School, Worchester, MA 01655, USA., Schoenrock SA; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Shaw GD; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Simon JM; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Smith CM; Department of Molecular Genetics and Microbiology, Duke University, Durham, NC 27710, USA., Styblo M; Department of Nutrition, Gillings School of Public Health, University of North Carolina, Chapel Hill, NC 27599, USA., Tarantino LM; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Woo J; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA., Pardo Manuel de Villena F; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA.
Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Oct 07; Vol. 14 (10).
Publication Type: Journal Article; Research Support, N.I.H., Extramural
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium: Internet ISSN: 2160-1836 (Electronic) Linking ISSN: 21601836 NLM ISO Abbreviation: G3 (Bethesda) Subsets: MEDLINE
Database: MEDLINE Ultimate
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PubType: Academic Journal
PubTypeId: academicJournal
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  Data: The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice.
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Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Mutant Mouse Resource and Research Center, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Cruz+Cisneros+MC%22">Cruz Cisneros MC</searchLink>; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Genetics and Molecular Biology Curriculum, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Drushal+M%22">Drushal M</searchLink>; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Ferris+MT%22">Ferris MT</searchLink>; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Fry+RC%22">Fry RC</searchLink>; 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Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Nguyen+DT%22">Nguyen DT</searchLink>; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Noll+KE%22">Noll KE</searchLink>; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Proulx+MK%22">Proulx MK</searchLink>; Department of Microbiology, UMass Chan Medical School, Worchester, MA 01655, USA.<br /><searchLink fieldCode="AU" term="%22Sassetti+CM%22">Sassetti CM</searchLink>; Department of Microbiology, UMass Chan Medical School, Worchester, MA 01655, USA.<br /><searchLink fieldCode="AU" term="%22Schoenrock+SA%22">Schoenrock SA</searchLink>; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Shaw+GD%22">Shaw GD</searchLink>; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.<br /><searchLink fieldCode="AU" term="%22Simon+JM%22">Simon JM</searchLink>; 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Systems Genetics Core Facility, Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA.
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