Putting computational models of immunity to the test - an invited challenge to predict B. pertussis vaccination outcomes.
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| Title: | Putting computational models of immunity to the test - an invited challenge to predict B. pertussis vaccination outcomes. |
|---|---|
| Authors: | Shinde P; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Willemsen L; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Anderson M; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Aoki M; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Basu S; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Burel JG; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Cheng P; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA., Dastidar SG; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Dunleavy A; School of Statistics, University of Minnesota, Minneapolis, MN, USA., Einav T; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.; Department of Medicine, University of California San Diego, San Diego, CA, USA., Forschmiedt J; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Fourati S; Department of Medicine, Division of Allergy and Immunology, Feinberg School of Medicine and Center for Human Immunobiology, Northwestern University, Chicago, IL, USA., Garcia J; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA., Gibson W; Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institute of Health, Bethesda, MD, USA., Greenbaum JA; LJI Bioinformatics Core, La Jolla Institute for Immunology, La Jolla, CA, USA., Guan L; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA., Guan W; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA., Gygi JP; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, USA., Ha B; LJI Bioinformatics Core, La Jolla Institute for Immunology, La Jolla, CA, USA., Hou J; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Hsiao J; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA., Huang Y; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Department of Global Health, University of Washington, Seattle, WA, USA., Jansen R; Biostatistics Core, Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA., Kakoty B; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Kang Z; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Kobie JJ; Department of Medicine, Division of Infectious Diseases, University of Alabama at Birmingham, Birmingham, AL, USA., Kojima M; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Konstorum A; Department of Pathology, Yale School of Medicine, New Haven, CT, USA.; Laboratory for Systems Biology, University of Florida., Lee J; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Lewis SA; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Li A; Division of Epidemiology and Community Health, University of Minnesota, Minneapolis, MN, USA., Lock EF; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Mahita J; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Mendes M; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Meng H; Department of Pathology, Yale School of Medicine, New Haven, CT, USA., Neher A; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Nili S; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Olsen LR; University of Denmark, Denmark., Orfield S; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Overton JA; Knocean, Inc., Toronto, Canada., Pai N; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Parker C; National Institute of Allergy and Infectious Diseases, National Institute of Health, Bethesda, MD, USA., Qian B; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA., Rasmussen M; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Reyna J; Center for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, USA.; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, San Diego, CA, USA., Richardson E; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Safo S; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Sorenson J; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Srinivasan A; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Thrupp N; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Tippalagama R; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA., Trevizani R; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.; Fundação Oswaldo Cruz, Fiocruz - Ceará, Brazil., Ventz S; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Wang J; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Wu CC; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA., Ay F; Department of Medicine, University of California San Diego, San Diego, CA, USA.; Center for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, USA., Grant B; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA., Kleinstein SH; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, USA., Peters B; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.; Department of Medicine, University of California San Diego, San Diego, CA, USA. |
| Source: | BioRxiv : the preprint server for biology [bioRxiv] 2024 Sep 08. Date of Electronic Publication: 2024 Sep 08. |
| Publication Type: | Journal Article; Preprint |
| Journal Info: | Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 39282381 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Putting computational models of immunity to the test - an invited challenge to predict B. pertussis vaccination outcomes. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Shinde+P%22">Shinde P</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Willemsen+L%22">Willemsen L</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Anderson+M%22">Anderson M</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Aoki+M%22">Aoki M</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Basu+S%22">Basu S</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Burel+JG%22">Burel JG</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Cheng+P%22">Cheng P</searchLink>; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Dastidar+SG%22">Dastidar SG</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Dunleavy+A%22">Dunleavy A</searchLink>; School of Statistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Einav+T%22">Einav T</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.; Department of Medicine, University of California San Diego, San Diego, CA, USA.<br /><searchLink fieldCode="AU" term="%22Forschmiedt+J%22">Forschmiedt J</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Fourati+S%22">Fourati S</searchLink>; Department of Medicine, Division of Allergy and Immunology, Feinberg School of Medicine and Center for Human Immunobiology, Northwestern University, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Garcia+J%22">Garcia J</searchLink>; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Gibson+W%22">Gibson W</searchLink>; Vaccine Research Center, National Institute of Allergy and Infectious Disease, National Institute of Health, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Greenbaum+JA%22">Greenbaum JA</searchLink>; LJI Bioinformatics Core, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Guan+L%22">Guan L</searchLink>; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Guan+W%22">Guan W</searchLink>; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Gygi+JP%22">Gygi JP</searchLink>; Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Ha+B%22">Ha B</searchLink>; LJI Bioinformatics Core, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Hou+J%22">Hou J</searchLink>; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Hsiao+J%22">Hsiao J</searchLink>; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Huang+Y%22">Huang Y</searchLink>; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Department of Global Health, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Jansen+R%22">Jansen R</searchLink>; Biostatistics Core, Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Kakoty+B%22">Kakoty B</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Kang+Z%22">Kang Z</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Kobie+JJ%22">Kobie JJ</searchLink>; Department of Medicine, Division of Infectious Diseases, University of Alabama at Birmingham, Birmingham, AL, USA.<br /><searchLink fieldCode="AU" term="%22Kojima+M%22">Kojima M</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Konstorum+A%22">Konstorum A</searchLink>; Department of Pathology, Yale School of Medicine, New Haven, CT, USA.; Laboratory for Systems Biology, University of Florida.<br /><searchLink fieldCode="AU" term="%22Lee+J%22">Lee J</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Lewis+SA%22">Lewis SA</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Li+A%22">Li A</searchLink>; Division of Epidemiology and Community Health, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Lock+EF%22">Lock EF</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Mahita+J%22">Mahita J</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Mendes+M%22">Mendes M</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Meng+H%22">Meng H</searchLink>; Department of Pathology, Yale School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Neher+A%22">Neher A</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Nili+S%22">Nili S</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Olsen+LR%22">Olsen LR</searchLink>; University of Denmark, Denmark.<br /><searchLink fieldCode="AU" term="%22Orfield+S%22">Orfield S</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Overton+JA%22">Overton JA</searchLink>; Knocean, Inc., Toronto, Canada.<br /><searchLink fieldCode="AU" term="%22Pai+N%22">Pai N</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Parker+C%22">Parker C</searchLink>; National Institute of Allergy and Infectious Diseases, National Institute of Health, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Qian+B%22">Qian B</searchLink>; Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Rasmussen+M%22">Rasmussen M</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Reyna+J%22">Reyna J</searchLink>; Center for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, USA.; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, San Diego, CA, USA.<br /><searchLink fieldCode="AU" term="%22Richardson+E%22">Richardson E</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Safo+S%22">Safo S</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Sorenson+J%22">Sorenson J</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Srinivasan+A%22">Srinivasan A</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Thrupp+N%22">Thrupp N</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Tippalagama+R%22">Tippalagama R</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Trevizani+R%22">Trevizani R</searchLink>; Center for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA, USA.; Fundação Oswaldo Cruz, Fiocruz - Ceará, Brazil.<br /><searchLink fieldCode="AU" term="%22Ventz+S%22">Ventz S</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Wang+J%22">Wang J</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Wu+CC%22">Wu CC</searchLink>; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA.<br /><searchLink fieldCode="AU" term="%22Ay+F%22">Ay F</searchLink>; Department of Medicine, University of California San Diego, San Diego, CA, USA.; 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