Comprehensive in silico CpG methylation analysis in hepatocellular carcinoma identifies tissue- and tumor-type specific marks disconnected from gene expression.

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Title: Comprehensive in silico CpG methylation analysis in hepatocellular carcinoma identifies tissue- and tumor-type specific marks disconnected from gene expression.
Authors: Bilbao I; Liver Unit and HPB Oncology Area, Clínica Universidad de Navarra, Avda. Pio XII, n55, 31008, Pamplona, Spain., Recalde M; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain., Daian F; Laboratoire d'Informatique Et Système (LIS), Aix Marseille Univ, Aix Marseille Univ, CNRS, 13009, Marseille, France., Herranz JM; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain., Elizalde M; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain., Iñarrairaegui M; Liver Unit and HPB Oncology Area, Clínica Universidad de Navarra, Avda. Pio XII, n55, 31008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain., Canale M; Biosciences Laboratory-IRCCS Istituto Romagnolo Per Lo Studio Dei Tumori (IRST) 'Dino Amadori', 47014, Meldola, Italy., Fernández-Barrena MG; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain., Casadei-Gardini A; Medical Oncology Department, IRCSS San Raffaele Scientific Institute, Milan, Italy.; Department of Oncology, Vita-Salute San Raffaele University, Milan, Italy., Sangro B; Liver Unit and HPB Oncology Area, Clínica Universidad de Navarra, Avda. Pio XII, n55, 31008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain., Ávila MA; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain., Landecho Acha MF; Internal Medicine Dpt. Clínica, Universidad de Navarra, 31008, Pamplona, Spain., Berasain C; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain. cberasain@unav.es.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain. cberasain@unav.es., Arechederra M; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain. macalderon@unav.es.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain. macalderon@unav.es.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain. macalderon@unav.es.
Source: Journal of physiology and biochemistry [J Physiol Biochem] 2024 Nov; Vol. 80 (4), pp. 865-879. Date of Electronic Publication: 2024 Sep 21.
Publication Type: Journal Article
Journal Info: Publisher: Servicio de Publicaciones de la Universidad De Navarra (departamentos de fisiología y nutrición y de bioquimica) Country of Publication: Spain NLM ID: 9812509 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1877-8755 (Electronic) Linking ISSN: 11387548 NLM ISO Abbreviation: J Physiol Biochem Subsets: MEDLINE
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  Data: Comprehensive in silico CpG methylation analysis in hepatocellular carcinoma identifies tissue- and tumor-type specific marks disconnected from gene expression.
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  Data: <searchLink fieldCode="AU" term="%22Bilbao+I%22">Bilbao I</searchLink>; Liver Unit and HPB Oncology Area, Clínica Universidad de Navarra, Avda. Pio XII, n55, 31008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Recalde+M%22">Recalde M</searchLink>; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Daian+F%22">Daian F</searchLink>; Laboratoire d'Informatique Et Système (LIS), Aix Marseille Univ, Aix Marseille Univ, CNRS, 13009, Marseille, France.<br /><searchLink fieldCode="AU" term="%22Herranz+JM%22">Herranz JM</searchLink>; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.<br /><searchLink fieldCode="AU" term="%22Elizalde+M%22">Elizalde M</searchLink>; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Iñarrairaegui+M%22">Iñarrairaegui M</searchLink>; Liver Unit and HPB Oncology Area, Clínica Universidad de Navarra, Avda. Pio XII, n55, 31008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Canale+M%22">Canale M</searchLink>; Biosciences Laboratory-IRCCS Istituto Romagnolo Per Lo Studio Dei Tumori (IRST) 'Dino Amadori', 47014, Meldola, Italy.<br /><searchLink fieldCode="AU" term="%22Fernández-Barrena+MG%22">Fernández-Barrena MG</searchLink>; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Casadei-Gardini+A%22">Casadei-Gardini A</searchLink>; Medical Oncology Department, IRCSS San Raffaele Scientific Institute, Milan, Italy.; Department of Oncology, Vita-Salute San Raffaele University, Milan, Italy.<br /><searchLink fieldCode="AU" term="%22Sangro+B%22">Sangro B</searchLink>; Liver Unit and HPB Oncology Area, Clínica Universidad de Navarra, Avda. Pio XII, n55, 31008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Ávila+MA%22">Ávila MA</searchLink>; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Landecho+Acha+MF%22">Landecho Acha MF</searchLink>; Internal Medicine Dpt. Clínica, Universidad de Navarra, 31008, Pamplona, Spain.<br /><searchLink fieldCode="AU" term="%22Berasain+C%22">Berasain C</searchLink>; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain. cberasain@unav.es.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain. cberasain@unav.es.<br /><searchLink fieldCode="AU" term="%22Arechederra+M%22">Arechederra M</searchLink>; Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra, 3008, Pamplona, Spain. macalderon@unav.es.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029, Madrid, Spain. macalderon@unav.es.; IdiSNA, Navarra Institute for Health Research, 31008, Pamplona, Spain. macalderon@unav.es.
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