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Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline.

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Title: Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline.
Authors: Aucouturier C; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.; Normandie Univ, UNICAEN, Caen, 14000, France., Soirat N; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.; SeqOne Genomics, Montpellier, 34000, France., Castéra L; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France., Bertrand D; SeqOne Genomics, Montpellier, 34000, France., Atkinson A; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France., Lavolé T; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France., Goardon N; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France., Quesnelle C; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France., Levilly J; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France., Barbachou S; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France., Legros A; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France., Caron O; Département Médecine Oncologique, Institut Gustave Roussy, Villejuif, France., Crivelli L; Service d'Oncogénétique, Centre Eugène Marquis, Rennes, France., Denizeau P; Service de génétique clinique, Centre Hospitalier Universitaire Rennes, Rennes, France., Berthet P; Service d'Oncogénétique, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France., Ricou A; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France., Boulouard F; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France., Vaur D; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France., Krieger S; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.; Normandie Univ, UNICAEN, Caen, 14000, France., Leman R; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France. r.leman@baclesse.unicancer.fr.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France. r.leman@baclesse.unicancer.fr.
Source: BMC genomics [BMC Genomics] 2024 Sep 30; Vol. 25 (1), pp. 909. Date of Electronic Publication: 2024 Sep 30.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline.
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  Data: <searchLink fieldCode="AU" term="%22Aucouturier+C%22">Aucouturier C</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.; Normandie Univ, UNICAEN, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Soirat+N%22">Soirat N</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.; SeqOne Genomics, Montpellier, 34000, France.<br /><searchLink fieldCode="AU" term="%22Castéra+L%22">Castéra L</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.<br /><searchLink fieldCode="AU" term="%22Bertrand+D%22">Bertrand D</searchLink>; SeqOne Genomics, Montpellier, 34000, France.<br /><searchLink fieldCode="AU" term="%22Atkinson+A%22">Atkinson A</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Lavolé+T%22">Lavolé T</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Goardon+N%22">Goardon N</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.<br /><searchLink fieldCode="AU" term="%22Quesnelle+C%22">Quesnelle C</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Levilly+J%22">Levilly J</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Barbachou+S%22">Barbachou S</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Legros+A%22">Legros A</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Caron+O%22">Caron O</searchLink>; Département Médecine Oncologique, Institut Gustave Roussy, Villejuif, France.<br /><searchLink fieldCode="AU" term="%22Crivelli+L%22">Crivelli L</searchLink>; Service d'Oncogénétique, Centre Eugène Marquis, Rennes, France.<br /><searchLink fieldCode="AU" term="%22Denizeau+P%22">Denizeau P</searchLink>; Service de génétique clinique, Centre Hospitalier Universitaire Rennes, Rennes, France.<br /><searchLink fieldCode="AU" term="%22Berthet+P%22">Berthet P</searchLink>; Service d'Oncogénétique, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Ricou+A%22">Ricou A</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.<br /><searchLink fieldCode="AU" term="%22Boulouard+F%22">Boulouard F</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.<br /><searchLink fieldCode="AU" term="%22Vaur+D%22">Vaur D</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.<br /><searchLink fieldCode="AU" term="%22Krieger+S%22">Krieger S</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France.; Normandie Univ, UNICAEN, Caen, 14000, France.<br /><searchLink fieldCode="AU" term="%22Leman+R%22">Leman R</searchLink>; Laboratoire de biologie et de génétique du cancer, Département de Biopathologie, Centre François Baclesse, Caen, 14000, France. r.leman@baclesse.unicancer.fr.; Cancer and Brain Genomics, FHU G4 Genomics, Inserm U1245, Normandie University, Rouen, 76183, France. r.leman@baclesse.unicancer.fr.
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