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Multiomic characterization of RNA microenvironments by oligonucleotide-mediated proximity-interactome mapping.

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Title: Multiomic characterization of RNA microenvironments by oligonucleotide-mediated proximity-interactome mapping.
Authors: Tsue AF; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA., Kania EE; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Shape Therapeutics, Seattle, WA, USA., Lei DQ; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada., Fields R; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Fred Hutchinson Cancer Center, Seattle, WA, USA., McGann CD; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Marciniak DM; Department of Pharmacology, University of Washington, Seattle, WA, USA., Hershberg EA; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Department of Genetics, Stanford University, Stanford, CA, USA., Deng X; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA., Kihiu M; Department of Pharmacology, University of Washington, Seattle, WA, USA., Ong SE; Department of Pharmacology, University of Washington, Seattle, WA, USA., Disteche CM; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.; Department of Medicine, University of Washington, Seattle, WA, USA., Kugel S; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Beliveau BJ; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Schweppe DK; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Shechner DM; Department of Pharmacology, University of Washington, Seattle, WA, USA. shechner@uw.edu.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA. shechner@uw.edu.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA. shechner@uw.edu.
Source: Nature methods [Nat Methods] 2024 Nov; Vol. 21 (11), pp. 2058-2071. Date of Electronic Publication: 2024 Oct 28.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Tsue+AF%22">Tsue AF</searchLink>; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Kania+EE%22">Kania EE</searchLink>; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Shape Therapeutics, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Lei+DQ%22">Lei DQ</searchLink>; Department of Pharmacology, University of Washington, Seattle, WA, USA.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.<br /><searchLink fieldCode="AU" term="%22Fields+R%22">Fields R</searchLink>; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Fred Hutchinson Cancer Center, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22McGann+CD%22">McGann CD</searchLink>; Department of Genome Sciences, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Marciniak+DM%22">Marciniak DM</searchLink>; Department of Pharmacology, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Hershberg+EA%22">Hershberg EA</searchLink>; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Department of Genetics, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Deng+X%22">Deng X</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Kihiu+M%22">Kihiu M</searchLink>; Department of Pharmacology, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Ong+SE%22">Ong SE</searchLink>; Department of Pharmacology, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Disteche+CM%22">Disteche CM</searchLink>; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.; Department of Medicine, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Kugel+S%22">Kugel S</searchLink>; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Beliveau+BJ%22">Beliveau BJ</searchLink>; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Schweppe+DK%22">Schweppe DK</searchLink>; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Shechner+DM%22">Shechner DM</searchLink>; Department of Pharmacology, University of Washington, Seattle, WA, USA. shechner@uw.edu.; Institute of Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA. shechner@uw.edu.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA. shechner@uw.edu.
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  Data: <searchLink fieldCode="JN" term="%22101215604%22">Nature methods</searchLink> [Nat Methods] 2024 Nov; Vol. 21 (11), pp. 2058-2071. <i>Date of Electronic Publication: </i>2024 Oct 28.
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