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scDOT: optimal transport for mapping senescent cells in spatial transcriptomics.

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Title: scDOT: optimal transport for mapping senescent cells in spatial transcriptomics.
Authors: Nguyen ND; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA., Rosas L; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA., Khaliullin T; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA., Jiang P; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA., Hasanaj E; Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA., Ovando-Ricardez JA; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA., Bueno M; Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Rahman I; Department of Environmental Medicine, University of Rochester Medical Center, Rochester, NY, USA., Pryhuber GS; Department of Pediatrics, University of Rochester Medical Center, Rochester, NY, USA., Li D; Department of Clinical and Translational Research, University of Rochester Medical Center, Rochester, NY, USA., Ma Q; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, USA., Finkel T; Aging Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Königshoff M; Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Eickelberg O; Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Rojas M; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA., Mora AL; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA., Lugo-Martinez J; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA. jlugomar@andrew.cmu.edu., Bar-Joseph Z; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA. zivbj@andrew.cmu.edu.; Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA. zivbj@andrew.cmu.edu.
Source: Genome biology [Genome Biol] 2024 Nov 08; Vol. 25 (1), pp. 288. Date of Electronic Publication: 2024 Nov 08.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural
Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Nguyen+ND%22">Nguyen ND</searchLink>; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Rosas+L%22">Rosas L</searchLink>; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA.<br /><searchLink fieldCode="AU" term="%22Khaliullin+T%22">Khaliullin T</searchLink>; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA.<br /><searchLink fieldCode="AU" term="%22Jiang+P%22">Jiang P</searchLink>; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Hasanaj+E%22">Hasanaj E</searchLink>; Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Ovando-Ricardez+JA%22">Ovando-Ricardez JA</searchLink>; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA.<br /><searchLink fieldCode="AU" term="%22Bueno+M%22">Bueno M</searchLink>; Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Rahman+I%22">Rahman I</searchLink>; Department of Environmental Medicine, University of Rochester Medical Center, Rochester, NY, USA.<br /><searchLink fieldCode="AU" term="%22Pryhuber+GS%22">Pryhuber GS</searchLink>; Department of Pediatrics, University of Rochester Medical Center, Rochester, NY, USA.<br /><searchLink fieldCode="AU" term="%22Li+D%22">Li D</searchLink>; Department of Clinical and Translational Research, University of Rochester Medical Center, Rochester, NY, USA.<br /><searchLink fieldCode="AU" term="%22Ma+Q%22">Ma Q</searchLink>; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, USA.<br /><searchLink fieldCode="AU" term="%22Finkel+T%22">Finkel T</searchLink>; Aging Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Königshoff+M%22">Königshoff M</searchLink>; Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Eickelberg+O%22">Eickelberg O</searchLink>; Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Rojas+M%22">Rojas M</searchLink>; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA.<br /><searchLink fieldCode="AU" term="%22Mora+AL%22">Mora AL</searchLink>; Dorothy M. Davis Heart and Lung Research Institute, Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, the Ohio State University, Columbus, OH, USA.<br /><searchLink fieldCode="AU" term="%22Lugo-Martinez+J%22">Lugo-Martinez J</searchLink>; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA. jlugomar@andrew.cmu.edu.<br /><searchLink fieldCode="AU" term="%22Bar-Joseph+Z%22">Bar-Joseph Z</searchLink>; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA. zivbj@andrew.cmu.edu.; Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA. zivbj@andrew.cmu.edu.
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  Data: <searchLink fieldCode="JN" term="%22100960660%22">Genome biology</searchLink> [Genome Biol] 2024 Nov 08; Vol. 25 (1), pp. 288. <i>Date of Electronic Publication: </i>2024 Nov 08.
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