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RNA-Puzzles Round V: blind predictions of 23 RNA structures.

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Title: RNA-Puzzles Round V: blind predictions of 23 RNA structures.
Authors: Bu F; GMU-GIBH Joint School of Life Sciences, The Guangdong-Hong Kong-Macao Joint Laboratory for Cell Fate Regulation and Diseases, Guangzhou National Laboratory, Guangzhou Medical University, Guangzhou, China.; School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China., Adam Y; Inter-institutional Graduate Program on Bioinformatics, Department of Computer Science and Mathematics, FFCLRP, University of São Paulo, Ribeirão Preto, Brazil.; Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria., Adamiak RW; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.; Institute of Computing Science, Poznan University of Technology, Poznan, Poland., Antczak M; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.; Institute of Computing Science, Poznan University of Technology, Poznan, Poland., de Aquino BRH; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Badepally NG; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Batey RT; Department of Biochemistry, University of Colorado at Boulder, Boulder, CO, USA., Baulin EF; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Boinski P; Institute of Computing Science, Poznan University of Technology, Poznan, Poland., Boniecki MJ; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Bujnicki JM; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Carpenter KA; Department of Biomedical Data Science, Stanford University, Stanford, CA, USA., Chacon J; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Department of Cell and Developmental Biology, University of California San Diego, San Diego, CA, USA., Chen SJ; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA., Chiu W; Department of Bioengineering and James H. Clark Center, Stanford University, Stanford, CA, USA., Cordero P; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Stripe, South San Francisco, CA, USA., Das NK; Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD, USA., Das R; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.; Biophysics program, Stanford University, Stanford, CA, USA., Dawson WK; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., DiMaio F; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Ding F; Department of Physics and Astronomy, Clemson University, Clemson, SC, USA., Dock-Bregeon AC; Laboratory of Integrative Biology of Marine Models (LBI2M), Sorbonne University-CNRS UMR8227, Roscoff, France., Dokholyan NV; Department of Pharmacology, Penn State College of Medicine, Hershey, PA, USA., Dror RO; Department of Computer Science, Stanford University, Stanford, CA, USA.; Department of Structural Biology, Stanford University, Stanford, CA, USA.; Department of Molecular and Cellular Physiology, Stanford University, Stanford, CA, USA.; Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA., Dunin-Horkawicz S; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Eismann S; Department of Applied Physics, Stanford University, Stanford, CA, USA.; Atomic AI, South San Francisco, CA, USA., Ennifar E; Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, Strasbourg, France., Esmaeeli R; Department of Chemistry and Quantum Theory Project, University of Florida, Gainesville, FL, USA., Farsani MA; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Ferré-D'Amaré AR; Laboratory of Nucleic Acids, National Heart, Lung and Blood Institute, Bethesda, MD, USA., Geniesse C; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Ghanim GE; Medical Research Council Laboratory of Molecular Biology, Cambridge, UK., Guzman HV; Instituto de Ciencia de Materials de Barcelona, ICMAB-CSIC, Bellaterra E-08193, Spain & Departamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, Madrid, Spain., Hood IV; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA., Huang L; Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University Guangzhou, Guangdong, China., Jain DS; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Jaryani F; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Jin L; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA., Joshi A; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Karelina M; Biophysics program, Stanford University, Stanford, CA, USA.; Department of Computer Science, Stanford University, Stanford, CA, USA., Kieft JS; Department of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO, USA.; New York Structural Biology Center, New York, NY, USA., Kladwang W; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA., Kmiecik S; Laboratory of Computational Biology, Biological and Chemical Research Center, Faculty of Chemistry, University of Warsaw, Warsaw, Poland., Koirala D; Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD, USA., Kollmann M; Department of Computer Science, Heinrich Heine University of Düsseldorf, Düsseldorf, Germany., Kretsch RC; Biophysics program, Stanford University, Stanford, CA, USA., Kurciński M; Laboratory of Computational Biology, Biological and Chemical Research Center, Faculty of Chemistry, University of Warsaw, Warsaw, Poland., Li J; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA., Li S; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA., Magnus M; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA., Masquida B; UMR 7156, CNRS - Université de Strasbourg, IPCB, Strasbourg, France., Moafinejad SN; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Mondal A; Department of Chemistry and Quantum Theory Project, University of Florida, Gainesville, FL, USA., Mukherjee S; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Nguyen THD; Medical Research Council Laboratory of Molecular Biology, Cambridge, UK., Nikolaev G; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Nithin C; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.; Laboratory of Computational Biology, Biological and Chemical Research Center, Faculty of Chemistry, University of Warsaw, Warsaw, Poland., Nye G; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA., Pandaranadar Jeyeram IPN; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Perez A; Department of Chemistry and Quantum Theory Project, University of Florida, Gainesville, FL, USA., Pham P; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA., Piccirilli JA; Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA.; Department of Chemistry, The University of Chicago, Chicago, IL, USA., Pilla SP; Laboratory of Computational Biology, Biological and Chemical Research Center, University of Warsaw, Warsaw, Poland., Pluta R; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Poblete S; Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Santiago, Chile.; Centro BASAL Ciencia & Vida, Universidad San Sebastián, Santiago, Chile., Ponce-Salvatierra A; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Popenda M; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland., Popenda L; NanoBioMedical Centre, Adam Mickiewicz University, Poznan, Poland., Pucci F; Computational Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium., Rangan R; Biophysics program, Stanford University, Stanford, CA, USA.; Atomic AI, South San Francisco, CA, USA., Ray A; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Ren A; Life Sciences Institute, Zhejiang University, Hangzhou, China., Sarzynska J; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland., Sha CM; Department of Pharmacology, Penn State College of Medicine, Hershey, PA, USA., Stefaniak F; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Su Z; The State Key Laboratory of Biotherapy, West China Hospital, Chengdu, China., Suddala KC; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA., Szachniuk M; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.; Institute of Computing Science, Poznan University of Technology, Poznan, Poland., Townshend R; Department of Computer Science, Stanford University, Stanford, CA, USA.; Atomic AI, South San Francisco, CA, USA., Trachman RJ 3rd; Laboratory of Nucleic Acids, National Heart, Lung and Blood Institute, Bethesda, MD, USA., Wang J; Department of Pharmacology, Penn State College of Medicine, Hershey, PA, USA., Wang W; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, China., Watkins A; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Prescient Design, Genentech Research and Early Development, South San Francisco, CA, USA., Wirecki TK; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Xiao Y; School of Physics and Key Laboratory of Molecular Biophysics of the Ministry of Education, Huazhong University of Science and Technology, Wuhan, China., Xiong P; School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.; Department of Biomedical Engineering, Suzhou Institute for Advanced Research, University of Science and Technology of China, Suzhou, China., Xiong Y; School of Physics and Key Laboratory of Molecular Biophysics of the Ministry of Education, Huazhong University of Science and Technology, Wuhan, China., Yang J; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, China., Yesselman JD; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.; Department of Chemistry, University of Nebraska, Lincoln, NE, USA., Zhang J; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA., Zhang Y; School of Physics and Key Laboratory of Molecular Biophysics of the Ministry of Education, Huazhong University of Science and Technology, Wuhan, China., Zhang Z; Department of Physics and Astronomy, Clemson University, Clemson, SC, USA., Zhou Y; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA., Zok T; Institute of Computing Science, Poznan University of Technology, Poznan, Poland., Zhang D; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA., Zhang S; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA., Żyła A; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland., Westhof E; Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, Strasbourg, France. e.westhof@ibmc-cnrs.unistra.fr.; Engineering Research Center of Clinical Functional Materials and Diagnosis & Treatment Devices of Zhejiang Province, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, China. e.westhof@ibmc-cnrs.unistra.fr., Miao Z; GMU-GIBH Joint School of Life Sciences, The Guangdong-Hong Kong-Macao Joint Laboratory for Cell Fate Regulation and Diseases, Guangzhou National Laboratory, Guangzhou Medical University, Guangzhou, China. miao_zhichao@gzlab.ac.cn.; Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, China. miao_zhichao@gzlab.ac.cn.; European Bioinformatics Institute, European Molecular Biology Laboratory, Wellcome Genome Campus, Cambridge, UK. miao_zhichao@gzlab.ac.cn.
Source: Nature methods [Nat Methods] 2025 Feb; Vol. 22 (2), pp. 399-411. Date of Electronic Publication: 2024 Dec 02.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: RNA-Puzzles Round V: blind predictions of 23 RNA structures.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AU" term="%22Bu+F%22">Bu F</searchLink>; GMU-GIBH Joint School of Life Sciences, The Guangdong-Hong Kong-Macao Joint Laboratory for Cell Fate Regulation and Diseases, Guangzhou National Laboratory, Guangzhou Medical University, Guangzhou, China.; School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.<br /><searchLink fieldCode="AU" term="%22Adam+Y%22">Adam Y</searchLink>; Inter-institutional Graduate Program on Bioinformatics, Department of Computer Science and Mathematics, FFCLRP, University of São Paulo, Ribeirão Preto, Brazil.; Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria.<br /><searchLink fieldCode="AU" term="%22Adamiak+RW%22">Adamiak RW</searchLink>; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.; Institute of Computing Science, Poznan University of Technology, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22Antczak+M%22">Antczak M</searchLink>; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.; Institute of Computing Science, Poznan University of Technology, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22de+Aquino+BRH%22">de Aquino BRH</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Badepally+NG%22">Badepally NG</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Batey+RT%22">Batey RT</searchLink>; Department of Biochemistry, University of Colorado at Boulder, Boulder, CO, USA.<br /><searchLink fieldCode="AU" term="%22Baulin+EF%22">Baulin EF</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Boinski+P%22">Boinski P</searchLink>; Institute of Computing Science, Poznan University of Technology, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22Boniecki+MJ%22">Boniecki MJ</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Bujnicki+JM%22">Bujnicki JM</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Carpenter+KA%22">Carpenter KA</searchLink>; Department of Biomedical Data Science, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Chacon+J%22">Chacon J</searchLink>; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Department of Cell and Developmental Biology, University of California San Diego, San Diego, CA, USA.<br /><searchLink fieldCode="AU" term="%22Chen+SJ%22">Chen SJ</searchLink>; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.<br /><searchLink fieldCode="AU" term="%22Chiu+W%22">Chiu W</searchLink>; Department of Bioengineering and James H. Clark Center, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Cordero+P%22">Cordero P</searchLink>; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Stripe, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Das+NK%22">Das NK</searchLink>; Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Das+R%22">Das R</searchLink>; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.; Biophysics program, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Dawson+WK%22">Dawson WK</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22DiMaio+F%22">DiMaio F</searchLink>; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Ding+F%22">Ding F</searchLink>; Department of Physics and Astronomy, Clemson University, Clemson, SC, USA.<br /><searchLink fieldCode="AU" term="%22Dock-Bregeon+AC%22">Dock-Bregeon AC</searchLink>; Laboratory of Integrative Biology of Marine Models (LBI2M), Sorbonne University-CNRS UMR8227, Roscoff, France.<br /><searchLink fieldCode="AU" term="%22Dokholyan+NV%22">Dokholyan NV</searchLink>; Department of Pharmacology, Penn State College of Medicine, Hershey, PA, USA.<br /><searchLink fieldCode="AU" term="%22Dror+RO%22">Dror RO</searchLink>; Department of Computer Science, Stanford University, Stanford, CA, USA.; Department of Structural Biology, Stanford University, Stanford, CA, USA.; Department of Molecular and Cellular Physiology, Stanford University, Stanford, CA, USA.; Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Dunin-Horkawicz+S%22">Dunin-Horkawicz S</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Eismann+S%22">Eismann S</searchLink>; Department of Applied Physics, Stanford University, Stanford, CA, USA.; Atomic AI, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ennifar+E%22">Ennifar E</searchLink>; Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, Strasbourg, France.<br /><searchLink fieldCode="AU" term="%22Esmaeeli+R%22">Esmaeeli R</searchLink>; Department of Chemistry and Quantum Theory Project, University of Florida, Gainesville, FL, USA.<br /><searchLink fieldCode="AU" term="%22Farsani+MA%22">Farsani MA</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Ferré-D'Amaré+AR%22">Ferré-D'Amaré AR</searchLink>; Laboratory of Nucleic Acids, National Heart, Lung and Blood Institute, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Geniesse+C%22">Geniesse C</searchLink>; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ghanim+GE%22">Ghanim GE</searchLink>; Medical Research Council Laboratory of Molecular Biology, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Guzman+HV%22">Guzman HV</searchLink>; Instituto de Ciencia de Materials de Barcelona, ICMAB-CSIC, Bellaterra E-08193, Spain & Departamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, Madrid, Spain.<br /><searchLink fieldCode="AU" term="%22Hood+IV%22">Hood IV</searchLink>; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Huang+L%22">Huang L</searchLink>; Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University Guangzhou, Guangdong, China.<br /><searchLink fieldCode="AU" term="%22Jain+DS%22">Jain DS</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Jaryani+F%22">Jaryani F</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Jin+L%22">Jin L</searchLink>; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.<br /><searchLink fieldCode="AU" term="%22Joshi+A%22">Joshi A</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Karelina+M%22">Karelina M</searchLink>; Biophysics program, Stanford University, Stanford, CA, USA.; Department of Computer Science, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kieft+JS%22">Kieft JS</searchLink>; Department of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO, USA.; New York Structural Biology Center, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Kladwang+W%22">Kladwang W</searchLink>; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kmiecik+S%22">Kmiecik S</searchLink>; Laboratory of Computational Biology, Biological and Chemical Research Center, Faculty of Chemistry, University of Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Koirala+D%22">Koirala D</searchLink>; Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Kollmann+M%22">Kollmann M</searchLink>; Department of Computer Science, Heinrich Heine University of Düsseldorf, Düsseldorf, Germany.<br /><searchLink fieldCode="AU" term="%22Kretsch+RC%22">Kretsch RC</searchLink>; Biophysics program, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kurciński+M%22">Kurciński M</searchLink>; Laboratory of Computational Biology, Biological and Chemical Research Center, Faculty of Chemistry, University of Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Li+J%22">Li J</searchLink>; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.<br /><searchLink fieldCode="AU" term="%22Li+S%22">Li S</searchLink>; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Magnus+M%22">Magnus M</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Masquida+B%22">Masquida B</searchLink>; UMR 7156, CNRS - Université de Strasbourg, IPCB, Strasbourg, France.<br /><searchLink fieldCode="AU" term="%22Moafinejad+SN%22">Moafinejad SN</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Mondal+A%22">Mondal A</searchLink>; Department of Chemistry and Quantum Theory Project, University of Florida, Gainesville, FL, USA.<br /><searchLink fieldCode="AU" term="%22Mukherjee+S%22">Mukherjee S</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Nguyen+THD%22">Nguyen THD</searchLink>; Medical Research Council Laboratory of Molecular Biology, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Nikolaev+G%22">Nikolaev G</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Nithin+C%22">Nithin C</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.; Laboratory of Computational Biology, Biological and Chemical Research Center, Faculty of Chemistry, University of Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Nye+G%22">Nye G</searchLink>; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Pandaranadar+Jeyeram+IPN%22">Pandaranadar Jeyeram IPN</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Perez+A%22">Perez A</searchLink>; Department of Chemistry and Quantum Theory Project, University of Florida, Gainesville, FL, USA.<br /><searchLink fieldCode="AU" term="%22Pham+P%22">Pham P</searchLink>; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Piccirilli+JA%22">Piccirilli JA</searchLink>; Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA.; Department of Chemistry, The University of Chicago, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Pilla+SP%22">Pilla SP</searchLink>; Laboratory of Computational Biology, Biological and Chemical Research Center, University of Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Pluta+R%22">Pluta R</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Poblete+S%22">Poblete S</searchLink>; Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Santiago, Chile.; Centro BASAL Ciencia & Vida, Universidad San Sebastián, Santiago, Chile.<br /><searchLink fieldCode="AU" term="%22Ponce-Salvatierra+A%22">Ponce-Salvatierra A</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Popenda+M%22">Popenda M</searchLink>; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22Popenda+L%22">Popenda L</searchLink>; NanoBioMedical Centre, Adam Mickiewicz University, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22Pucci+F%22">Pucci F</searchLink>; Computational Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Rangan+R%22">Rangan R</searchLink>; Biophysics program, Stanford University, Stanford, CA, USA.; Atomic AI, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ray+A%22">Ray A</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Ren+A%22">Ren A</searchLink>; Life Sciences Institute, Zhejiang University, Hangzhou, China.<br /><searchLink fieldCode="AU" term="%22Sarzynska+J%22">Sarzynska J</searchLink>; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22Sha+CM%22">Sha CM</searchLink>; Department of Pharmacology, Penn State College of Medicine, Hershey, PA, USA.<br /><searchLink fieldCode="AU" term="%22Stefaniak+F%22">Stefaniak F</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Su+Z%22">Su Z</searchLink>; The State Key Laboratory of Biotherapy, West China Hospital, Chengdu, China.<br /><searchLink fieldCode="AU" term="%22Suddala+KC%22">Suddala KC</searchLink>; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Szachniuk+M%22">Szachniuk M</searchLink>; Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.; Institute of Computing Science, Poznan University of Technology, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22Townshend+R%22">Townshend R</searchLink>; Department of Computer Science, Stanford University, Stanford, CA, USA.; Atomic AI, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Trachman+RJ+3rd%22">Trachman RJ 3rd</searchLink>; Laboratory of Nucleic Acids, National Heart, Lung and Blood Institute, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Wang+J%22">Wang J</searchLink>; Department of Pharmacology, Penn State College of Medicine, Hershey, PA, USA.<br /><searchLink fieldCode="AU" term="%22Wang+W%22">Wang W</searchLink>; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, China.<br /><searchLink fieldCode="AU" term="%22Watkins+A%22">Watkins A</searchLink>; Department of Biochemistry, Stanford University, Stanford, CA, USA.; Prescient Design, Genentech Research and Early Development, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Wirecki+TK%22">Wirecki TK</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Xiao+Y%22">Xiao Y</searchLink>; School of Physics and Key Laboratory of Molecular Biophysics of the Ministry of Education, Huazhong University of Science and Technology, Wuhan, China.<br /><searchLink fieldCode="AU" term="%22Xiong+P%22">Xiong P</searchLink>; School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.; Department of Biomedical Engineering, Suzhou Institute for Advanced Research, University of Science and Technology of China, Suzhou, China.<br /><searchLink fieldCode="AU" term="%22Xiong+Y%22">Xiong Y</searchLink>; School of Physics and Key Laboratory of Molecular Biophysics of the Ministry of Education, Huazhong University of Science and Technology, Wuhan, China.<br /><searchLink fieldCode="AU" term="%22Yang+J%22">Yang J</searchLink>; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, China.<br /><searchLink fieldCode="AU" term="%22Yesselman+JD%22">Yesselman JD</searchLink>; Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.; Department of Chemistry, University of Nebraska, Lincoln, NE, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+J%22">Zhang J</searchLink>; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+Y%22">Zhang Y</searchLink>; School of Physics and Key Laboratory of Molecular Biophysics of the Ministry of Education, Huazhong University of Science and Technology, Wuhan, China.<br /><searchLink fieldCode="AU" term="%22Zhang+Z%22">Zhang Z</searchLink>; Department of Physics and Astronomy, Clemson University, Clemson, SC, USA.<br /><searchLink fieldCode="AU" term="%22Zhou+Y%22">Zhou Y</searchLink>; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.<br /><searchLink fieldCode="AU" term="%22Zok+T%22">Zok T</searchLink>; Institute of Computing Science, Poznan University of Technology, Poznan, Poland.<br /><searchLink fieldCode="AU" term="%22Zhang+D%22">Zhang D</searchLink>; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+S%22">Zhang S</searchLink>; Department of Physics, Department of Biochemistry and Institute for Data Science and Informatics, University of Missouri, Columbia, MO, USA.<br /><searchLink fieldCode="AU" term="%22Żyła+A%22">Żyła A</searchLink>; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Westhof+E%22">Westhof E</searchLink>; Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, Strasbourg, France. e.westhof@ibmc-cnrs.unistra.fr.; Engineering Research Center of Clinical Functional Materials and Diagnosis & Treatment Devices of Zhejiang Province, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, China. e.westhof@ibmc-cnrs.unistra.fr.<br /><searchLink fieldCode="AU" term="%22Miao+Z%22">Miao Z</searchLink>; GMU-GIBH Joint School of Life Sciences, The Guangdong-Hong Kong-Macao Joint Laboratory for Cell Fate Regulation and Diseases, Guangzhou National Laboratory, Guangzhou Medical University, Guangzhou, China. miao_zhichao@gzlab.ac.cn.; Shanghai Key Laboratory of Anesthesiology and Brain Functional Modulation, Clinical Research Center for Anesthesiology and Perioperative Medicine, Translational Research Institute of Brain and Brain-Like Intelligence, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, China. miao_zhichao@gzlab.ac.cn.; European Bioinformatics Institute, European Molecular Biology Laboratory, Wellcome Genome Campus, Cambridge, UK. miao_zhichao@gzlab.ac.cn.
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  Data: <searchLink fieldCode="JN" term="%22101215604%22">Nature methods</searchLink> [Nat Methods] 2025 Feb; Vol. 22 (2), pp. 399-411. <i>Date of Electronic Publication: </i>2024 Dec 02.
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