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An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes.

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Title: An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes.
Authors: Li C; Department of Computer and Information Sciences, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, USA.; Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, Pennsylvania 19122, USA., Bonder MJ; Department of Genetics, Groningen, University of Groningen, University Medical Center Groningen, Groningen 9713 AV, Netherlands.; Division of Computational Genomics and Systems Genetics, German Cancer Research Center, 69120 Heidelberg, Germany., Syed S; The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut 06032, USA., Jensen M; Department of Molecular Biochemistry and Biophysics, Yale University, New Haven, Connecticut 06510, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA., Gerstein MB; Department of Molecular Biochemistry and Biophysics, Yale University, New Haven, Connecticut 06510, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA., Zody MC; New York Genome Center, New York, New York 10013, USA., Chaisson MJP; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, California 90089, USA., Talkowski ME; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.; Center for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.; Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA., Marschall T; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital, Heinrich Heine University, 40225 Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, 40225 Düsseldorf, Germany., Korbel JO; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195-5065, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA., Lee C; The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut 06032, USA.; Department of Genetics and Genome Sciences, UConn Health, Farmington, Connecticut 06030-6403, USA., Shi X; Department of Computer and Information Sciences, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, USA; mindyshi@temple.edu.; Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, Pennsylvania 19122, USA.
Corporate Authors: Human Genome Structural Variation Consortium (HGSVC), HGSVC Functional Analysis Working Group
Source: Genome research [Genome Res] 2024 Dec 23; Vol. 34 (12), pp. 2304-2318. Date of Electronic Publication: 2024 Dec 23.
Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes.
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  Data: <searchLink fieldCode="AU" term="%22Li+C%22">Li C</searchLink>; Department of Computer and Information Sciences, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, USA.; Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, Pennsylvania 19122, USA.<br /><searchLink fieldCode="AU" term="%22Bonder+MJ%22">Bonder MJ</searchLink>; Department of Genetics, Groningen, University of Groningen, University Medical Center Groningen, Groningen 9713 AV, Netherlands.; Division of Computational Genomics and Systems Genetics, German Cancer Research Center, 69120 Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Syed+S%22">Syed S</searchLink>; The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut 06032, USA.<br /><searchLink fieldCode="AU" term="%22Jensen+M%22">Jensen M</searchLink>; Department of Molecular Biochemistry and Biophysics, Yale University, New Haven, Connecticut 06510, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA.<br /><searchLink fieldCode="AU" term="%22Gerstein+MB%22">Gerstein MB</searchLink>; Department of Molecular Biochemistry and Biophysics, Yale University, New Haven, Connecticut 06510, USA.; Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA.<br /><searchLink fieldCode="AU" term="%22Zody+MC%22">Zody MC</searchLink>; New York Genome Center, New York, New York 10013, USA.<br /><searchLink fieldCode="AU" term="%22Chaisson+MJP%22">Chaisson MJP</searchLink>; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, California 90089, USA.<br /><searchLink fieldCode="AU" term="%22Talkowski+ME%22">Talkowski ME</searchLink>; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.; Center for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.; Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.<br /><searchLink fieldCode="AU" term="%22Marschall+T%22">Marschall T</searchLink>; Institute for Medical Biometry and Bioinformatics, Medical Faculty and University Hospital, Heinrich Heine University, 40225 Düsseldorf, Germany.; Center for Digital Medicine, Heinrich Heine University, 40225 Düsseldorf, Germany.<br /><searchLink fieldCode="AU" term="%22Korbel+JO%22">Korbel JO</searchLink>; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Eichler+EE%22">Eichler EE</searchLink>; Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195-5065, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA.<br /><searchLink fieldCode="AU" term="%22Lee+C%22">Lee C</searchLink>; The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut 06032, USA.; Department of Genetics and Genome Sciences, UConn Health, Farmington, Connecticut 06030-6403, USA.<br /><searchLink fieldCode="AU" term="%22Shi+X%22">Shi X</searchLink>; Department of Computer and Information Sciences, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, USA; mindyshi@temple.edu.; Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, Pennsylvania 19122, USA.
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  Data: <searchLink fieldCode="JN" term="%229518021%22">Genome research</searchLink> [Genome Res] 2024 Dec 23; Vol. 34 (12), pp. 2304-2318. <i>Date of Electronic Publication: </i>2024 Dec 23.
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  Data: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Cold+Spring+Harbor+Laboratory+Press%22">Cold Spring Harbor Laboratory Press </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>9518021 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1549-5469 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2210889051%22">10889051 </searchLink><i>NLM ISO Abbreviation: </i>Genome Res <i>Subsets: </i>MEDLINE
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