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An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation.

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Title: An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation.
Authors: Moore JE; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Pratt HE; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Fan K; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Phalke N; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Fisher J; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Elhajjajy SI; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Andrews G; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Gao M; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Shedd N; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Fu Y; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Lacadie MC; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Meza J; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Ganna M; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Choudhury E; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Swofford R; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA., Farrell NP; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Pampari A; Department of Computer Science, Stanford University, Stanford, CA, USA., Ramalingam V; Department of Genetics, Stanford University, Stanford, CA, USA., Reese F; Developmental and Cell Biology, University of California Irvine, Irvine, USA., Borsari B; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Yu M; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Wattenberg E; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Ruiz-Romero M; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Dr. Aiguader 88, Barcelona, Catalonia, Spain., Razavi-Mohseni M; Department of Biomedical Engineering and McKusick-Nathans Department of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA., Xu J; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Galeev T; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Beer MA; Department of Biomedical Engineering and McKusick-Nathans Department of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA., Guigó R; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Dr. Aiguader 88, Barcelona, Catalonia, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain., Gerstein M; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Engreitz J; Department of Genetics, Stanford University, Stanford, CA, USA.; Basic Sciences and Engineering Initiative, Betty Irene Moore Children's Heart Center, Lucile Packard Children's Hospital, Stanford, CA, USA.; Novo Nordisk Foundation Center for Genomic Mechanisms of Disease, Broad Institute, Cambridge, MA, USA.; Stanford Cardiovascular Institute, Stanford University, Stanford, CA, USA., Ljungman M; Departments of Radiation Oncology and Environmental Health Sciences, University of Michigan, Ann Arbor, MI, USA., Reddy TE; Duke Center for Statistical Genetics and Genomics, Duke University, Durham, NC, USA.; Division of Integrative Genomics, Department of Biostatistics Bioinformatics, Duke University Medical School, Durham, NC, USA.; Center for Genomic and Computational Biology, Duke University Medical School, Durham, NC, USA., Snyder MP; Department of Genetics, Stanford University, Stanford, CA, USA., Epstein CB; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Gaskell E; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Bernstein BE; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Dickel DE; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Visel A; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Pennacchio LA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Mortazavi A; Developmental and Cell Biology, University of California Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California Irvine, Irvine, CA, USA., Kundaje A; Department of Computer Science, Stanford University, Stanford, CA, USA.; Department of Genetics, Stanford University, Stanford, CA, USA., Weng Z; Department of Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, MA, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Dec 26. Date of Electronic Publication: 2024 Dec 26.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Dr. Aiguader 88, Barcelona, Catalonia, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain.<br /><searchLink fieldCode="AU" term="%22Gerstein+M%22">Gerstein M</searchLink>; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Engreitz+J%22">Engreitz J</searchLink>; Department of Genetics, Stanford University, Stanford, CA, USA.; Basic Sciences and Engineering Initiative, Betty Irene Moore Children's Heart Center, Lucile Packard Children's Hospital, Stanford, CA, USA.; Novo Nordisk Foundation Center for Genomic Mechanisms of Disease, Broad Institute, Cambridge, MA, USA.; Stanford Cardiovascular Institute, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ljungman+M%22">Ljungman M</searchLink>; 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