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Same-Slide Spatial Multi-Omics Integration Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment.

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Title: Same-Slide Spatial Multi-Omics Integration Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment.
Authors: Yeo YY; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA, United States., Chang Y; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Pelotonia Institute for Immuno-Oncology, The Ohio State University, Columbus, OH, United States.; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, United States., Qiu H; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Yiu SPT; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Michel HA; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA, United States., Wu W; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Jin X; Pelotonia Institute for Immuno-Oncology, The Ohio State University, Columbus, OH, United States.; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, United States., Kure S; Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States., Parmelee L; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Luo S; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Cramer P; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Lee JL; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Wang Y; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Yeung J; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Ahmar NE; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States., Simsek B; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States., Mohanna R; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States., Van Orden M; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States., Lu W; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States., Livak KJ; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States., Li S; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States., Shahryari J; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA., Kingsley L; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA., Al-Humadi RN; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA., Nasr S; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA., Nkosi D; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States., Sadigh S; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States., Rock P; Department of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, NY, United States., Frauenfeld L; Department of Pathology and Neuropathology, University Hospital and Comprehensive Cancer Center Tübingen, Tübingen, Germany., Kaufmann L; Department of Pathology and Neuropathology, University Hospital and Comprehensive Cancer Center Tübingen, Tübingen, Germany., Zhu B; Broad Institute of Harvard and MIT, Cambridge, MA, United States., Basak A; Broad Institute of Harvard and MIT, Cambridge, MA, United States., Dhanikonda N; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Chan CN; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Krull J; Pelotonia Institute for Immuno-Oncology, The Ohio State University, Columbus, OH, United States.; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, United States., Cho YW; Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, United States., Chen CY; Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, United States., Lee JYJ; Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Wang H; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, United States., Zhao B; Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, United States., Loo LH; Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Kim DM; Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, United States., Boussiotis V; Department of Hematology Oncology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States., Zhang B; Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States., Shalek AK; Broad Institute of Harvard and MIT, Cambridge, MA, United States., Howitt B; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA., Signoretti S; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States., Schürch CM; Department of Pathology and Neuropathology, University Hospital and Comprehensive Cancer Center Tübingen, Tübingen, Germany., Hodi FS; Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States., Burack WR; Department of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, NY, United States., Rodig SJ; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States., Ma Q; Pelotonia Institute for Immuno-Oncology, The Ohio State University, Columbus, OH, United States.; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, United States., Jiang S; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA, United States.; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.; Broad Institute of Harvard and MIT, Cambridge, MA, United States.; Department of Pathology, Dana Farber Cancer Institute, Boston, MA, United States.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Dec 22. Date of Electronic Publication: 2024 Dec 22.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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PubType: Academic Journal
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  Data: Same-Slide Spatial Multi-Omics Integration Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment.
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  Data: <searchLink fieldCode="AU" term="%22Yeo+YY%22">Yeo YY</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Chang+Y%22">Chang Y</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Pelotonia Institute for Immuno-Oncology, The Ohio State University, Columbus, OH, United States.; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, United States.<br /><searchLink fieldCode="AU" term="%22Qiu+H%22">Qiu H</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Yiu+SPT%22">Yiu SPT</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Michel+HA%22">Michel HA</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Wu+W%22">Wu W</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Jin+X%22">Jin X</searchLink>; Pelotonia Institute for Immuno-Oncology, The Ohio State University, Columbus, OH, United States.; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, United States.<br /><searchLink fieldCode="AU" term="%22Kure+S%22">Kure S</searchLink>; Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Parmelee+L%22">Parmelee L</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Luo+S%22">Luo S</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Cramer+P%22">Cramer P</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Lee+JL%22">Lee JL</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Wang+Y%22">Wang Y</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Yeung+J%22">Yeung J</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Ahmar+NE%22">Ahmar NE</searchLink>; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Simsek+B%22">Simsek B</searchLink>; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Mohanna+R%22">Mohanna R</searchLink>; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Van+Orden+M%22">Van Orden M</searchLink>; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Lu+W%22">Lu W</searchLink>; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Livak+KJ%22">Livak KJ</searchLink>; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Li+S%22">Li S</searchLink>; Translational Immunogenomics Lab, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Shahryari+J%22">Shahryari J</searchLink>; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kingsley+L%22">Kingsley L</searchLink>; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Al-Humadi+RN%22">Al-Humadi RN</searchLink>; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Nasr+S%22">Nasr S</searchLink>; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Nkosi+D%22">Nkosi D</searchLink>; 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Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Lee+JYJ%22">Lee JYJ</searchLink>; Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.<br /><searchLink fieldCode="AU" term="%22Wang+H%22">Wang H</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Zhao+B%22">Zhao B</searchLink>; Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Loo+LH%22">Loo LH</searchLink>; Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.<br /><searchLink fieldCode="AU" term="%22Kim+DM%22">Kim DM</searchLink>; 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Department of Pathology and Neuropathology, University Hospital and Comprehensive Cancer Center Tübingen, Tübingen, Germany.<br /><searchLink fieldCode="AU" term="%22Hodi+FS%22">Hodi FS</searchLink>; Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Burack+WR%22">Burack WR</searchLink>; Department of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, NY, United States.<br /><searchLink fieldCode="AU" term="%22Rodig+SJ%22">Rodig SJ</searchLink>; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.<br /><searchLink fieldCode="AU" term="%22Ma+Q%22">Ma Q</searchLink>; Pelotonia Institute for Immuno-Oncology, The Ohio State University, Columbus, OH, United States.; Department of Biomedical Informatics, College of Medicine, Ohio State University, Columbus, OH, United States.<br /><searchLink fieldCode="AU" term="%22Jiang+S%22">Jiang S</searchLink>; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States.; Program in Virology, Division of Medical Sciences, Harvard Medical School, Boston, MA, United States.; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.; Broad Institute of Harvard and MIT, Cambridge, MA, United States.; Department of Pathology, Dana Farber Cancer Institute, Boston, MA, United States.
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          Dates:
            – D: 22
              M: 12
              Text: 2024 Dec 22
              Type: published
              Y: 2024
          Identifiers:
            – Type: issn-electronic
              Value: 2692-8205
          Titles:
            – TitleFull: BioRxiv : the preprint server for biology
              Type: main
ResultId 1