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Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).

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Title: Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).
Authors: Loughran G; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland. g.loughran@ucc.ie.; EIRNA Bio, Bioinnovation Hub, Cork, Ireland. g.loughran@ucc.ie., Andreev DE; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia., Terenin IM; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia., Namy O; Institute for Integrative Biology of the Cell, CEA, Université Paris-Saclay, CNRS, Gif-sur-Yvette, France., Mikl M; Department of Human Biology, University of Haifa, Haifa, Israel., Yordanova MM; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland., McManus CJ; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA., Firth AE; Division of Virology, Department of Pathology, Addenbrookes Hospital, University of Cambridge, Cambridge, UK., Atkins JF; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland., Fraser CS; Department of Molecular and Cellular Biology, College of Biological Sciences, University of California, Davis, Davis, CA, USA., Ignatova Z; Institute of Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany., Iwasaki S; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwa, Japan.; RNA Systems Biochemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Japan., Kufel J; Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland., Larsson O; Department of Oncology-Pathology, Science for Life Laboratory, Karolinska Institute, Stockholm, Sweden., Leidel SA; Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland., Mankin AS; Department of Pharmaceutical Sciences, College of Pharmacy, University of Illinois Chicago, Chicago, IL, USA.; Center for Biomolecular Sciences, University of Illinois Chicago, Chicago, IL, USA., Mariotti M; Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain., Tanenbaum ME; Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands.; Department of Bionanoscience, Delft University of Technology, Delft, the Netherlands., Topisirovic I; Lady Davis Institute, McGill University, Montréal, Quebec, Canada.; Gerald Bronfman Department of Oncology, McGill University, Montréal, Quebec, Canada.; Department of Biochemistry, McGill University, Montréal, Quebec, Canada.; Division of Experimental Medicine, McGill University, Montréal, Quebec, Canada., Vázquez-Laslop N; Department of Pharmaceutical Sciences, College of Pharmacy, University of Illinois Chicago, Chicago, IL, USA., Viero G; Institute of Biophysics, National Research Council (CNR) Unit, Povo, Italy., Caliskan N; Helmholtz Institute for RNA-based Infection Research, Helmholtz Centre for Infection Research (HZI), Würzburg, Germany.; Faculty of Biology and Preclinical Medicine, University of Regensburg, Regensburg, Germany., Chen Y; Department of Bioinformatics and Computational Biology, Division of Quantitative Sciences, the University of Texas MD Anderson Cancer Center, Houston, TX, USA., Clark PL; Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, USA., Dinman JD; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA.; Institute for Bioscience & Biotechnology Research, Rockville, MD, USA., Farabaugh PJ; Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD, USA., Gilbert WV; Department of Molecular Biophysics and Biochemistry, Yale School of Medicine, New Haven, CT, USA., Ivanov P; Division of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, Boston, MA, USA.; Department of Medicine, Harvard Medical School, Boston, MA, USA., Kieft JS; Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; RNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; New York Structural Biology Center, New York, NY, USA., Mühlemann O; Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland., Sachs MS; Department of Biology, Texas A&M University, College Station, TX, USA., Shatsky IN; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia., Sonenberg N; Department of Biochemistry, McGill University, Montréal, Quebec, Canada., Steckelberg AL; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA., Willis AE; MRC Toxicology Unit, University of Cambridge, Cambridge, UK., Woodside MT; Department of Physics, Li Ka Shing Institute of Virology and Centre for Prions and Protein Folding Diseases, University of Alberta, Edmonton, Alberta, Canada., Valasek LS; Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic. valasekl@biomed.cas.cz., Dmitriev SE; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia. sergey.dmitriev@belozersky.msu.ru., Baranov PV; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland. p.baranov@ucc.ie.
Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2025 Mar; Vol. 32 (3), pp. 418-430. Date of Electronic Publication: 2025 Mar 03.
Publication Type: Journal Article; Review
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol Subsets: MEDLINE
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  Data: Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).
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  Data: <searchLink fieldCode="AU" term="%22Loughran+G%22">Loughran G</searchLink>; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland. g.loughran@ucc.ie.; EIRNA Bio, Bioinnovation Hub, Cork, Ireland. g.loughran@ucc.ie.<br /><searchLink fieldCode="AU" term="%22Andreev+DE%22">Andreev DE</searchLink>; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia.<br /><searchLink fieldCode="AU" term="%22Terenin+IM%22">Terenin IM</searchLink>; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.<br /><searchLink fieldCode="AU" term="%22Namy+O%22">Namy O</searchLink>; Institute for Integrative Biology of the Cell, CEA, Université Paris-Saclay, CNRS, Gif-sur-Yvette, France.<br /><searchLink fieldCode="AU" term="%22Mikl+M%22">Mikl M</searchLink>; Department of Human Biology, University of Haifa, Haifa, Israel.<br /><searchLink fieldCode="AU" term="%22Yordanova+MM%22">Yordanova MM</searchLink>; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.<br /><searchLink fieldCode="AU" term="%22McManus+CJ%22">McManus CJ</searchLink>; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Firth+AE%22">Firth AE</searchLink>; Division of Virology, Department of Pathology, Addenbrookes Hospital, University of Cambridge, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Atkins+JF%22">Atkins JF</searchLink>; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.<br /><searchLink fieldCode="AU" term="%22Fraser+CS%22">Fraser CS</searchLink>; Department of Molecular and Cellular Biology, College of Biological Sciences, University of California, Davis, Davis, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ignatova+Z%22">Ignatova Z</searchLink>; Institute of Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.<br /><searchLink fieldCode="AU" term="%22Iwasaki+S%22">Iwasaki S</searchLink>; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo, Kashiwa, Japan.; RNA Systems Biochemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Japan.<br /><searchLink fieldCode="AU" term="%22Kufel+J%22">Kufel J</searchLink>; Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Larsson+O%22">Larsson O</searchLink>; Department of Oncology-Pathology, Science for Life Laboratory, Karolinska Institute, Stockholm, Sweden.<br /><searchLink fieldCode="AU" term="%22Leidel+SA%22">Leidel SA</searchLink>; Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Mankin+AS%22">Mankin AS</searchLink>; Department of Pharmaceutical Sciences, College of Pharmacy, University of Illinois Chicago, Chicago, IL, USA.; Center for Biomolecular Sciences, University of Illinois Chicago, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Mariotti+M%22">Mariotti M</searchLink>; Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Tanenbaum+ME%22">Tanenbaum ME</searchLink>; Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands.; Department of Bionanoscience, Delft University of Technology, Delft, the Netherlands.<br /><searchLink fieldCode="AU" term="%22Topisirovic+I%22">Topisirovic I</searchLink>; Lady Davis Institute, McGill University, Montréal, Quebec, Canada.; Gerald Bronfman Department of Oncology, McGill University, Montréal, Quebec, Canada.; Department of Biochemistry, McGill University, Montréal, Quebec, Canada.; Division of Experimental Medicine, McGill University, Montréal, Quebec, Canada.<br /><searchLink fieldCode="AU" term="%22Vázquez-Laslop+N%22">Vázquez-Laslop N</searchLink>; Department of Pharmaceutical Sciences, College of Pharmacy, University of Illinois Chicago, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Viero+G%22">Viero G</searchLink>; Institute of Biophysics, National Research Council (CNR) Unit, Povo, Italy.<br /><searchLink fieldCode="AU" term="%22Caliskan+N%22">Caliskan N</searchLink>; Helmholtz Institute for RNA-based Infection Research, Helmholtz Centre for Infection Research (HZI), Würzburg, Germany.; Faculty of Biology and Preclinical Medicine, University of Regensburg, Regensburg, Germany.<br /><searchLink fieldCode="AU" term="%22Chen+Y%22">Chen Y</searchLink>; Department of Bioinformatics and Computational Biology, Division of Quantitative Sciences, the University of Texas MD Anderson Cancer Center, Houston, TX, USA.<br /><searchLink fieldCode="AU" term="%22Clark+PL%22">Clark PL</searchLink>; Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, USA.<br /><searchLink fieldCode="AU" term="%22Dinman+JD%22">Dinman JD</searchLink>; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA.; Institute for Bioscience & Biotechnology Research, Rockville, MD, USA.<br /><searchLink fieldCode="AU" term="%22Farabaugh+PJ%22">Farabaugh PJ</searchLink>; Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Gilbert+WV%22">Gilbert WV</searchLink>; Department of Molecular Biophysics and Biochemistry, Yale School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Ivanov+P%22">Ivanov P</searchLink>; Division of Rheumatology, Inflammation and Immunity, Brigham and Women's Hospital, Boston, MA, USA.; Department of Medicine, Harvard Medical School, Boston, MA, USA.<br /><searchLink fieldCode="AU" term="%22Kieft+JS%22">Kieft JS</searchLink>; Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; RNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; New York Structural Biology Center, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Mühlemann+O%22">Mühlemann O</searchLink>; Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Sachs+MS%22">Sachs MS</searchLink>; 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Laboratory of Regulation of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic. valasekl@biomed.cas.cz.<br /><searchLink fieldCode="AU" term="%22Dmitriev+SE%22">Dmitriev SE</searchLink>; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia. sergey.dmitriev@belozersky.msu.ru.<br /><searchLink fieldCode="AU" term="%22Baranov+PV%22">Baranov PV</searchLink>; School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland. p.baranov@ucc.ie.
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