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High-resolution mapping of sigma factor DNA-binding sequences using artificial promoters, RNA aptamers, and deep sequencing.

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Title: High-resolution mapping of sigma factor DNA-binding sequences using artificial promoters, RNA aptamers, and deep sequencing.
Authors: Khan EA; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway., Rückert-Reed C; Bielefeld University, Center for Biotechnology (CeBiTec), Technology Platform Genomics, Bielefeld 33615, Germany.; Bielefeld University, Medical School OWL, Bielefeld 33615, Germany., Dahiya GS; Syngens AS, Trondheim 7089, Norway., Tietze L; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway., Fages-Lartaud M; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway., Busche T; Bielefeld University, Center for Biotechnology (CeBiTec), Technology Platform Genomics, Bielefeld 33615, Germany.; Bielefeld University, Medical School OWL, Bielefeld 33615, Germany., Kalinowski J; Bielefeld University, Center for Biotechnology (CeBiTec), Technology Platform Genomics, Bielefeld 33615, Germany., Shingler V; Department of Molecular Biology, Umeå University, Umeå 90187, Sweden., Lale R; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway.; Syngens AS, Trondheim 7089, Norway.
Source: Nucleic acids research [Nucleic Acids Res] 2025 Apr 10; Vol. 53 (7).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Khan+EA%22">Khan EA</searchLink>; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway.<br /><searchLink fieldCode="AU" term="%22Rückert-Reed+C%22">Rückert-Reed C</searchLink>; Bielefeld University, Center for Biotechnology (CeBiTec), Technology Platform Genomics, Bielefeld 33615, Germany.; Bielefeld University, Medical School OWL, Bielefeld 33615, Germany.<br /><searchLink fieldCode="AU" term="%22Dahiya+GS%22">Dahiya GS</searchLink>; Syngens AS, Trondheim 7089, Norway.<br /><searchLink fieldCode="AU" term="%22Tietze+L%22">Tietze L</searchLink>; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway.<br /><searchLink fieldCode="AU" term="%22Fages-Lartaud+M%22">Fages-Lartaud M</searchLink>; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway.<br /><searchLink fieldCode="AU" term="%22Busche+T%22">Busche T</searchLink>; Bielefeld University, Center for Biotechnology (CeBiTec), Technology Platform Genomics, Bielefeld 33615, Germany.; Bielefeld University, Medical School OWL, Bielefeld 33615, Germany.<br /><searchLink fieldCode="AU" term="%22Kalinowski+J%22">Kalinowski J</searchLink>; Bielefeld University, Center for Biotechnology (CeBiTec), Technology Platform Genomics, Bielefeld 33615, Germany.<br /><searchLink fieldCode="AU" term="%22Shingler+V%22">Shingler V</searchLink>; Department of Molecular Biology, Umeå University, Umeå 90187, Sweden.<br /><searchLink fieldCode="AU" term="%22Lale+R%22">Lale R</searchLink>; Department of Biotechnology and Food Science, Faculty of Natural Sciences, Norwegian University of Science and Technology, Trondheim 7491, Norway.; Syngens AS, Trondheim 7089, Norway.
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        Value: 10.1093/nar/gkaf306
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              Text: 2025 Apr 10
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