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Alignment-free viral sequence classification at scale.

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Title: Alignment-free viral sequence classification at scale.
Authors: van Zyl DJ; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa. danielvanzyl@sun.ac.za.; Computer Science Division, Department of Mathematical Sciences, Faculty of Science, Stellenbosch University, Stellenbosch, South Africa. danielvanzyl@sun.ac.za., Dunaiski M; Computer Science Division, Department of Mathematical Sciences, Faculty of Science, Stellenbosch University, Stellenbosch, South Africa., Tegally H; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Baxter C; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa., de Oliveira T; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.; Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa.; Department of Global Health, University of Washington, Seattle, USA., Xavier JS; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Institute of Agricultural Sciences, Universidade Federal dos Vales do Jequitinhonha e Mucuri (UFVJM), Unaí, Brazil.; Institute of Biological Sciences, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.
Corporate Authors: INFORM Africa research study group
Source: BMC genomics [BMC Genomics] 2025 Apr 18; Vol. 26 (1), pp. 389. Date of Electronic Publication: 2025 Apr 18.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22van+Zyl+DJ%22">van Zyl DJ</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa. danielvanzyl@sun.ac.za.; Computer Science Division, Department of Mathematical Sciences, Faculty of Science, Stellenbosch University, Stellenbosch, South Africa. danielvanzyl@sun.ac.za.<br /><searchLink fieldCode="AU" term="%22Dunaiski+M%22">Dunaiski M</searchLink>; Computer Science Division, Department of Mathematical Sciences, Faculty of Science, Stellenbosch University, Stellenbosch, South Africa.<br /><searchLink fieldCode="AU" term="%22Tegally+H%22">Tegally H</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.<br /><searchLink fieldCode="AU" term="%22Baxter+C%22">Baxter C</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22de+Oliveira+T%22">de Oliveira T</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.; Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa.; Department of Global Health, University of Washington, Seattle, USA.<br /><searchLink fieldCode="AU" term="%22Xavier+JS%22">Xavier JS</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Institute of Agricultural Sciences, Universidade Federal dos Vales do Jequitinhonha e Mucuri (UFVJM), Unaí, Brazil.; Institute of Biological Sciences, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.
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  Data: <searchLink fieldCode="JN" term="%22100965258%22">BMC genomics</searchLink> [BMC Genomics] 2025 Apr 18; Vol. 26 (1), pp. 389. <i>Date of Electronic Publication: </i>2025 Apr 18.
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