Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex.

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Title: Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex.
Authors: Johansen NJ; Allen Institute for Brain Science, Seattle, WA 98109, USA., Kempynck N; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Zemke NR; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA., Somasundaram S; Allen Institute for Brain Science, Seattle, WA 98109, USA., De Winter S; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Hooper M; Allen Institute for Brain Science, Seattle, WA 98109, USA., Dwivedi D; Allen Institute for Brain Science, Seattle, WA 98109, USA., Lohia R; Physiology Department and Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada., Wehbe F; Maisonneuve-Rosemont Hospital Research Centre, University of Montreal, Montreal, QC, Canada., Li B; School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China., Abaffyová D; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Armand EJ; Bioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA 92093, USA., De Man J; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Ekşi EC; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Hecker N; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Hulselmans G; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Konstantakos V; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Mauduit D; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Mich JK; Allen Institute for Brain Science, Seattle, WA 98109, USA., Partel G; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Daigle TL; Allen Institute for Brain Science, Seattle, WA 98109, USA., Levi BP; Allen Institute for Brain Science, Seattle, WA 98109, USA., Zhang K; School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang, China., Tanaka Y; Maisonneuve-Rosemont Hospital Research Centre, University of Montreal, Montreal, QC, Canada., Gillis J; Physiology Department and Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada., Ting JT; Allen Institute for Brain Science, Seattle, WA 98109, USA; Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA., Ben-Simon Y; Allen Institute for Brain Science, Seattle, WA 98109, USA., Miller J; Allen Institute for Brain Science, Seattle, WA 98109, USA., Ecker JR; Salk Institute for Biological Studies, La Jolla, CA 92037, USA., Ren B; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA., Aerts S; VIB Center for AI & Computational Biology, VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics, Leuven, Belgium., Lein ES; Allen Institute for Brain Science, Seattle, WA 98109, USA., Tasic B; Allen Institute for Brain Science, Seattle, WA 98109, USA., Bakken TE; Allen Institute for Brain Science, Seattle, WA 98109, USA. Electronic address: trygveb@alleninstitute.org.
Source: Cell genomics [Cell Genom] 2025 Jun 11; Vol. 5 (6), pp. 100879. Date of Electronic Publication: 2025 May 21.
Publication Type: Journal Article
Journal Info: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:2666-979X
DOI:10.1016/j.xgen.2025.100879