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Enabling pan-repository reanalysis for big data science of public metabolomics data.

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Title: Enabling pan-repository reanalysis for big data science of public metabolomics data.
Authors: El Abiead Y; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Strobel M; Department of Computer Science and Engineering, University of California Riverside, Riverside, CA, USA., Payne T; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Fahy E; Department of Bioengineering, and San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0505, USA., O'Donovan C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Subramamiam S; Department of Bioengineering, and San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0505, USA., Vizcaíno JA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Yurekten O; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Deleray V; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Zuffa S; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Xing S; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Mannochio-Russo H; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Mohanty I; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Zhao HN; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Caraballo-Rodriguez AM; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., P Gomes PW; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Faculty of Chemistry, Federal University of Pará, Belém, PA, Brazil., Avalon NE; Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.; Department of Pharmaceutical Sciences, University of California, Irvine, California, 92697, Irvine, USA., Northen TR; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.; The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Bowen BP; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.; The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Louie KB; The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Dorrestein PC; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Pharmacology, University of California San Diego, La Jolla, CA, 92093, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, 92093, USA., Wang M; Department of Computer Science and Engineering, University of California Riverside, Riverside, CA, USA. mingxun.wang@cs.ucr.edu.
Source: Nature communications [Nat Commun] 2025 May 24; Vol. 16 (1), pp. 4838. Date of Electronic Publication: 2025 May 24.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: Enabling pan-repository reanalysis for big data science of public metabolomics data.
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  Data: <searchLink fieldCode="AU" term="%22El+Abiead+Y%22">El Abiead Y</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Strobel+M%22">Strobel M</searchLink>; Department of Computer Science and Engineering, University of California Riverside, Riverside, CA, USA.<br /><searchLink fieldCode="AU" term="%22Payne+T%22">Payne T</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Fahy+E%22">Fahy E</searchLink>; Department of Bioengineering, and San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0505, USA.<br /><searchLink fieldCode="AU" term="%22O'Donovan+C%22">O'Donovan C</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Subramamiam+S%22">Subramamiam S</searchLink>; Department of Bioengineering, and San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0505, USA.<br /><searchLink fieldCode="AU" term="%22Vizcaíno+JA%22">Vizcaíno JA</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Yurekten+O%22">Yurekten O</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Deleray+V%22">Deleray V</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Zuffa+S%22">Zuffa S</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Xing+S%22">Xing S</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Mannochio-Russo+H%22">Mannochio-Russo H</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Mohanty+I%22">Mohanty I</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Zhao+HN%22">Zhao HN</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Caraballo-Rodriguez+AM%22">Caraballo-Rodriguez AM</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22P+Gomes+PW%22">P Gomes PW</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Faculty of Chemistry, Federal University of Pará, Belém, PA, Brazil.<br /><searchLink fieldCode="AU" term="%22Avalon+NE%22">Avalon NE</searchLink>; Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.; Department of Pharmaceutical Sciences, University of California, Irvine, California, 92697, Irvine, USA.<br /><searchLink fieldCode="AU" term="%22Northen+TR%22">Northen TR</searchLink>; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.; The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Bowen+BP%22">Bowen BP</searchLink>; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, 94720, USA.; The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Louie+KB%22">Louie KB</searchLink>; The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Dorrestein+PC%22">Dorrestein PC</searchLink>; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Pharmacology, University of California San Diego, La Jolla, CA, 92093, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, 92093, USA.<br /><searchLink fieldCode="AU" term="%22Wang+M%22">Wang M</searchLink>; Department of Computer Science and Engineering, University of California Riverside, Riverside, CA, USA. mingxun.wang@cs.ucr.edu.
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  Data: <searchLink fieldCode="JN" term="%22101528555%22">Nature communications</searchLink> [Nat Commun] 2025 May 24; Vol. 16 (1), pp. 4838. <i>Date of Electronic Publication: </i>2025 May 24.
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