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Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts.

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Title: Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts.
Authors: David KT; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235., Schraiber JG; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089.; Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089., Crandall JG; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726., Labella AL; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235.; Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223., Opulente DA; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.; Department of Biology, Villanova University, Villanova, PA 19085., Harrison MC; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235., Wolters JF; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726., Zhou X; Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Center, South China Agricultural University, Guangzhou 510642, China., Shen XX; Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China., Groenewald M; Westerdijk Fungal Biodiversity Institute, Utrecht 3584, The Netherlands., Hittinger CT; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726., Pennell M; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089.; Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089.; Department of Computational Biology, Cornell University, Ithaca, NY 14853., Rokas A; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235.
Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2025 Jun 10; Vol. 122 (23), pp. e2500165122. Date of Electronic Publication: 2025 Jun 03.
Publication Type: Journal Article
Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22David+KT%22">David KT</searchLink>; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235.<br /><searchLink fieldCode="AU" term="%22Schraiber+JG%22">Schraiber JG</searchLink>; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089.; Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089.<br /><searchLink fieldCode="AU" term="%22Crandall+JG%22">Crandall JG</searchLink>; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.<br /><searchLink fieldCode="AU" term="%22Labella+AL%22">Labella AL</searchLink>; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235.; Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223.<br /><searchLink fieldCode="AU" term="%22Opulente+DA%22">Opulente DA</searchLink>; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.; Department of Biology, Villanova University, Villanova, PA 19085.<br /><searchLink fieldCode="AU" term="%22Harrison+MC%22">Harrison MC</searchLink>; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235.<br /><searchLink fieldCode="AU" term="%22Wolters+JF%22">Wolters JF</searchLink>; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.<br /><searchLink fieldCode="AU" term="%22Zhou+X%22">Zhou X</searchLink>; Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Center, South China Agricultural University, Guangzhou 510642, China.<br /><searchLink fieldCode="AU" term="%22Shen+XX%22">Shen XX</searchLink>; Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.<br /><searchLink fieldCode="AU" term="%22Groenewald+M%22">Groenewald M</searchLink>; Westerdijk Fungal Biodiversity Institute, Utrecht 3584, The Netherlands.<br /><searchLink fieldCode="AU" term="%22Hittinger+CT%22">Hittinger CT</searchLink>; Laboratory of Genetics, James Franklin Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, Department of Energy Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53726.<br /><searchLink fieldCode="AU" term="%22Pennell+M%22">Pennell M</searchLink>; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089.; Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089.; Department of Computational Biology, Cornell University, Ithaca, NY 14853.<br /><searchLink fieldCode="AU" term="%22Rokas+A%22">Rokas A</searchLink>; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235.; Evolutionary Studies Initiative, Vanderbilt University, Nashville, TN 37235.
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