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Spatiotemporal Single-Cell Analysis Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease.

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Title: Spatiotemporal Single-Cell Analysis Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease.
Authors: Shi L; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Uzuni A; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA., Wang XK; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA., Pressler M; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Harle DW; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.; Columbia Institute of Human Nutrition, Columbia University, New York, NY, 10032, USA., Chakrabarti S; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA., Macedo R; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA., Belay K; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA., Gordillo CA; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA., Raps E; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA., Zhang JYA; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Nazaret A; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Computer Science, Columbia University, New York, NY, 10027, USA., Fan JL; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Jin Y; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Shen X; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Fuller JS; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Azad T; Department of Computer Science, Columbia University, New York, NY, 10027, USA., Huang J; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Chainani P; Department Statistics and Data Science, Yale University, CT, 06520, USA., Abrams JA; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, Columbia University, New York, NY, 10032, USA., Del Portillo A; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, Columbia University, New York, NY, 10032, USA., Mapara MY; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA., Alhamar M; Department of Pathology and Laboratory Medicine, Henry Ford Health, Detroit, MI, 48202, USA., Sykes M; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA., McFaline-Figueroa JL; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA., Azizi E; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.; Department of Computer Science, Columbia University, New York, NY, 10027, USA.; Data Science Institute, Columbia University, New York, NY, 10027, USA., Reshef R; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 May 28. Date of Electronic Publication: 2025 May 28.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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PubType: Academic Journal
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  Data: Spatiotemporal Single-Cell Analysis Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease.
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  Data: <searchLink fieldCode="AU" term="%22Shi+L%22">Shi L</searchLink>; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Uzuni+A%22">Uzuni A</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Wang+XK%22">Wang XK</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Pressler+M%22">Pressler M</searchLink>; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Harle+DW%22">Harle DW</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.; Columbia Institute of Human Nutrition, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Chakrabarti+S%22">Chakrabarti S</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Macedo+R%22">Macedo R</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Belay+K%22">Belay K</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Gordillo+CA%22">Gordillo CA</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Raps+E%22">Raps E</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+JYA%22">Zhang JYA</searchLink>; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Nazaret+A%22">Nazaret A</searchLink>; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Computer Science, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Fan+JL%22">Fan JL</searchLink>; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Jin+Y%22">Jin Y</searchLink>; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Shen+X%22">Shen X</searchLink>; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Fuller+JS%22">Fuller JS</searchLink>; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Azad+T%22">Azad T</searchLink>; Department of Computer Science, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Huang+J%22">Huang J</searchLink>; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Chainani+P%22">Chainani P</searchLink>; Department Statistics and Data Science, Yale University, CT, 06520, USA.<br /><searchLink fieldCode="AU" term="%22Abrams+JA%22">Abrams JA</searchLink>; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Del+Portillo+A%22">Del Portillo A</searchLink>; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Mapara+MY%22">Mapara MY</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22Alhamar+M%22">Alhamar M</searchLink>; Department of Pathology and Laboratory Medicine, Henry Ford Health, Detroit, MI, 48202, USA.<br /><searchLink fieldCode="AU" term="%22Sykes+M%22">Sykes M</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.<br /><searchLink fieldCode="AU" term="%22McFaline-Figueroa+JL%22">McFaline-Figueroa JL</searchLink>; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Azizi+E%22">Azizi E</searchLink>; Irving Institute for Cancer Dynamics, Columbia University, New York, NY, 10027, USA.; Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.; Department of Computer Science, Columbia University, New York, NY, 10027, USA.; Data Science Institute, Columbia University, New York, NY, 10027, USA.<br /><searchLink fieldCode="AU" term="%22Reshef+R%22">Reshef R</searchLink>; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, 10032, USA.; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.
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