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STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging.

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Title: STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging.
Authors: Pitino E; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain., Pascual-Reguant A; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain; Universitat de Barcelona (UB), Barcelona, Spain., Segato-Dezem F; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA., Wise K; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia., Salvador-Martinez I; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain., Crowell HL; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain., Marção M; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA., Ruiz M; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain., Courtois E; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Flynn WF; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Sivajothi S; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Soja E; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Caratù G; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain., Mora-Roldan GA; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia., Dredge BK; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia., Liu Y; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA., Chasteen H; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA., Mohenska M; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia; Department of Anatomy & Developmental Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia., Nieto JC; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain., Yip RKH; The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia., Mishi RD; The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia., Polo JM; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia; Department of Anatomy & Developmental Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia., Abdalfttah M; Spanish National Cancer Research Centre (CNIO), Madrid, Spain., Sullivan AE; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia., Plummer JT; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Cellular and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA; Comprehensive Cancer Center, St. Jude Children's Research Hospital, Memphis, TN, USA. Electronic address: jasmine.plummer@stjude.org., Heyn H; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain; Universitat de Barcelona (UB), Barcelona, Spain; ICREA, Barcelona, Spain. Electronic address: holger.heyn@cnag.eu., Martelotto LG; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia. Electronic address: lucianomartelotto@gmail.com.
Source: Cell [Cell] 2025 Sep 04; Vol. 188 (18), pp. 5100-5117.e26. Date of Electronic Publication: 2025 Jun 17.
Publication Type: Journal Article
Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: STAMP: Single-cell transcriptomics analysis and multimodal profiling through imaging.
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  Data: <searchLink fieldCode="AU" term="%22Pitino+E%22">Pitino E</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Pascual-Reguant+A%22">Pascual-Reguant A</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain; Universitat de Barcelona (UB), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Segato-Dezem+F%22">Segato-Dezem F</searchLink>; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.<br /><searchLink fieldCode="AU" term="%22Wise+K%22">Wise K</searchLink>; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia.<br /><searchLink fieldCode="AU" term="%22Salvador-Martinez+I%22">Salvador-Martinez I</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Crowell+HL%22">Crowell HL</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Marção+M%22">Marção M</searchLink>; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.<br /><searchLink fieldCode="AU" term="%22Ruiz+M%22">Ruiz M</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Courtois+E%22">Courtois E</searchLink>; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Flynn+WF%22">Flynn WF</searchLink>; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Sivajothi+S%22">Sivajothi S</searchLink>; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Soja+E%22">Soja E</searchLink>; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Caratù+G%22">Caratù G</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Mora-Roldan+GA%22">Mora-Roldan GA</searchLink>; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia.<br /><searchLink fieldCode="AU" term="%22Dredge+BK%22">Dredge BK</searchLink>; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia.<br /><searchLink fieldCode="AU" term="%22Liu+Y%22">Liu Y</searchLink>; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.<br /><searchLink fieldCode="AU" term="%22Chasteen+H%22">Chasteen H</searchLink>; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.<br /><searchLink fieldCode="AU" term="%22Mohenska+M%22">Mohenska M</searchLink>; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia; Department of Anatomy & Developmental Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Nieto+JC%22">Nieto JC</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Yip+RKH%22">Yip RKH</searchLink>; The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Mishi+RD%22">Mishi RD</searchLink>; The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Polo+JM%22">Polo JM</searchLink>; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia; Department of Anatomy & Developmental Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Abdalfttah+M%22">Abdalfttah M</searchLink>; Spanish National Cancer Research Centre (CNIO), Madrid, Spain.<br /><searchLink fieldCode="AU" term="%22Sullivan+AE%22">Sullivan AE</searchLink>; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia.<br /><searchLink fieldCode="AU" term="%22Plummer+JT%22">Plummer JT</searchLink>; Center for Spatial Omics, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA; Department of Cellular and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA; Comprehensive Cancer Center, St. Jude Children's Research Hospital, Memphis, TN, USA. Electronic address: jasmine.plummer@stjude.org.<br /><searchLink fieldCode="AU" term="%22Heyn+H%22">Heyn H</searchLink>; Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain; Universitat de Barcelona (UB), Barcelona, Spain; ICREA, Barcelona, Spain. Electronic address: holger.heyn@cnag.eu.<br /><searchLink fieldCode="AU" term="%22Martelotto+LG%22">Martelotto LG</searchLink>; Adelaide Centre for Epigenetics, School of Biomedicine, the University of Adelaide, Adelaide, SA, Australia; South Australian immunoGENomics Cancer Institute, The University of Adelaide, Adelaide, SA, Australia. Electronic address: lucianomartelotto@gmail.com.
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  Data: <searchLink fieldCode="JN" term="%220413066%22">Cell</searchLink> [Cell] 2025 Sep 04; Vol. 188 (18), pp. 5100-5117.e26. <i>Date of Electronic Publication: </i>2025 Jun 17.
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