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Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper.

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Title: Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper.
Authors: Woodcroft BJ; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia. b.woodcroft@qut.edu.au., Aroney STN; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia., Zhao R; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia., Cunningham M; School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia., Mitchell JAM; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia., Nurdiansyah R; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia., Blackall L; School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia., Tyson GW; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia.
Source: Nature biotechnology [Nat Biotechnol] 2026 Jun; Vol. 44 (6), pp. 948-953. Date of Electronic Publication: 2025 Jul 16.
Publication Type: Journal Article
Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE
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  Data: Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper.
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  Data: <searchLink fieldCode="AU" term="%22Woodcroft+BJ%22">Woodcroft BJ</searchLink>; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia. b.woodcroft@qut.edu.au.<br /><searchLink fieldCode="AU" term="%22Aroney+STN%22">Aroney STN</searchLink>; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia.<br /><searchLink fieldCode="AU" term="%22Zhao+R%22">Zhao R</searchLink>; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia.<br /><searchLink fieldCode="AU" term="%22Cunningham+M%22">Cunningham M</searchLink>; School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia.<br /><searchLink fieldCode="AU" term="%22Mitchell+JAM%22">Mitchell JAM</searchLink>; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia.<br /><searchLink fieldCode="AU" term="%22Nurdiansyah+R%22">Nurdiansyah R</searchLink>; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia.<br /><searchLink fieldCode="AU" term="%22Blackall+L%22">Blackall L</searchLink>; School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia.<br /><searchLink fieldCode="AU" term="%22Tyson+GW%22">Tyson GW</searchLink>; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Queensland, Australia.
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  Data: <searchLink fieldCode="JN" term="%229604648%22">Nature biotechnology</searchLink> [Nat Biotechnol] 2026 Jun; Vol. 44 (6), pp. 948-953. <i>Date of Electronic Publication: </i>2025 Jul 16.
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              Text: 2026 Jun
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