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Benchmarking Metagenomic Pipelines for the Detection of Foodborne Pathogens in Simulated Microbial Communities.

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Title: Benchmarking Metagenomic Pipelines for the Detection of Foodborne Pathogens in Simulated Microbial Communities.
Authors: Timilsina M; Department of Veterinary Medicine, University of Maryland, College Park, United States., Chundru D; Department of Veterinary Medicine, University of Maryland, College Park, United States., Pradhan AK; Department of Nutrition and Food Science, University of Maryland, College Park, United States., Blaustein RA; Department of Nutrition and Food Science, University of Maryland, College Park, United States., Ghanem M; Department of Veterinary Medicine, University of Maryland, College Park, United States. Electronic address: mghanem@umd.edu.
Source: Journal of food protection [J Food Prot] 2025 Aug 22; Vol. 88 (9), pp. 100583. Date of Electronic Publication: 2025 Jul 17.
Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 7703944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1944-9097 (Electronic) Linking ISSN: 0362028X NLM ISO Abbreviation: J Food Prot Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Timilsina+M%22">Timilsina M</searchLink>; Department of Veterinary Medicine, University of Maryland, College Park, United States.<br /><searchLink fieldCode="AU" term="%22Chundru+D%22">Chundru D</searchLink>; Department of Veterinary Medicine, University of Maryland, College Park, United States.<br /><searchLink fieldCode="AU" term="%22Pradhan+AK%22">Pradhan AK</searchLink>; Department of Nutrition and Food Science, University of Maryland, College Park, United States.<br /><searchLink fieldCode="AU" term="%22Blaustein+RA%22">Blaustein RA</searchLink>; Department of Nutrition and Food Science, University of Maryland, College Park, United States.<br /><searchLink fieldCode="AU" term="%22Ghanem+M%22">Ghanem M</searchLink>; Department of Veterinary Medicine, University of Maryland, College Park, United States. Electronic address: mghanem@umd.edu.
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  Data: <searchLink fieldCode="JN" term="%227703944%22">Journal of food protection</searchLink> [J Food Prot] 2025 Aug 22; Vol. 88 (9), pp. 100583. <i>Date of Electronic Publication: </i>2025 Jul 17.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Elsevier%22">Elsevier </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>7703944 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1944-9097 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%220362028X%22">0362028X </searchLink><i>NLM ISO Abbreviation: </i>J Food Prot <i>Subsets: </i>MEDLINE
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        Value: 10.1016/j.jfp.2025.100583
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        Text: English
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              Text: 2025 Aug 22
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