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Shallow metagenomic shotgun sequencing improves detection of pathogenic species in cystic fibrosis respiratory samples.

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Title: Shallow metagenomic shotgun sequencing improves detection of pathogenic species in cystic fibrosis respiratory samples.
Authors: Cauwenberghs E; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium., De Boeck I; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium., Delanghe L; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium., Van Rillaer T; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium., Demuyser T; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium; Antwerp University Hospital, Department of Microbiology, Wilrijkstraat 10, 2650 Edegem, Belgium; AIMS Lab, Center for Neurosciences, Faculty of Medicine and Pharmacy, Vrije Universiteit Brussel (VUB), Laarbeeklaan 103, 1090 Brussels, Belgium., Spacova I; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium., Verhulst S; University of Antwerp, Laboratory of Experimental Medicine and pediatrics, Universiteitsplein 1, 2610 Wilrijk, Belgium; Antwerp University Hospital, Department of pediatric Pulmonology, Wilrijkstraat 10, 2650 Edegem, Belgium., Van Hoorenbeeck K; University of Antwerp, Laboratory of Experimental Medicine and pediatrics, Universiteitsplein 1, 2610 Wilrijk, Belgium; Antwerp University Hospital, Department of pediatric Pulmonology, Wilrijkstraat 10, 2650 Edegem, Belgium., Lebeer S; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium. Electronic address: sarah.lebeer@uantwerpen.be.
Source: Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society [J Cyst Fibros] 2025 Sep; Vol. 24 (5), pp. 909-915. Date of Electronic Publication: 2025 Jul 30.
Publication Type: Journal Article
Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101128966 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-5010 (Electronic) Linking ISSN: 15691993 NLM ISO Abbreviation: J Cyst Fibros Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Shallow metagenomic shotgun sequencing improves detection of pathogenic species in cystic fibrosis respiratory samples.
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  Data: <searchLink fieldCode="AU" term="%22Cauwenberghs+E%22">Cauwenberghs E</searchLink>; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium.<br /><searchLink fieldCode="AU" term="%22De+Boeck+I%22">De Boeck I</searchLink>; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium.<br /><searchLink fieldCode="AU" term="%22Delanghe+L%22">Delanghe L</searchLink>; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium.<br /><searchLink fieldCode="AU" term="%22Van+Rillaer+T%22">Van Rillaer T</searchLink>; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium.<br /><searchLink fieldCode="AU" term="%22Demuyser+T%22">Demuyser T</searchLink>; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium; Antwerp University Hospital, Department of Microbiology, Wilrijkstraat 10, 2650 Edegem, Belgium; AIMS Lab, Center for Neurosciences, Faculty of Medicine and Pharmacy, Vrije Universiteit Brussel (VUB), Laarbeeklaan 103, 1090 Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Spacova+I%22">Spacova I</searchLink>; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium.<br /><searchLink fieldCode="AU" term="%22Verhulst+S%22">Verhulst S</searchLink>; University of Antwerp, Laboratory of Experimental Medicine and pediatrics, Universiteitsplein 1, 2610 Wilrijk, Belgium; Antwerp University Hospital, Department of pediatric Pulmonology, Wilrijkstraat 10, 2650 Edegem, Belgium.<br /><searchLink fieldCode="AU" term="%22Van+Hoorenbeeck+K%22">Van Hoorenbeeck K</searchLink>; University of Antwerp, Laboratory of Experimental Medicine and pediatrics, Universiteitsplein 1, 2610 Wilrijk, Belgium; Antwerp University Hospital, Department of pediatric Pulmonology, Wilrijkstraat 10, 2650 Edegem, Belgium.<br /><searchLink fieldCode="AU" term="%22Lebeer+S%22">Lebeer S</searchLink>; University of Antwerp, Department of Bioscience Engineering, Groenenborgerlaan 171, 2020 Antwerp, Belgium. Electronic address: sarah.lebeer@uantwerpen.be.
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  Data: <searchLink fieldCode="JN" term="%22101128966%22">Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society</searchLink> [J Cyst Fibros] 2025 Sep; Vol. 24 (5), pp. 909-915. <i>Date of Electronic Publication: </i>2025 Jul 30.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Elsevier%22">Elsevier </searchLink><i>Country of Publication: </i>Netherlands <i>NLM ID: </i>101128966 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1873-5010 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2215691993%22">15691993 </searchLink><i>NLM ISO Abbreviation: </i>J Cyst Fibros <i>Subsets: </i>MEDLINE
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        Value: 10.1016/j.jcf.2025.07.011
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        Text: English
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              Text: 2025 Sep
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