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Contamination-controlled upper gastrointestinal microbiota profiling reveals salivary-duodenal community types linked to opportunistic pathogen carriage and inflammation.

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Title: Contamination-controlled upper gastrointestinal microbiota profiling reveals salivary-duodenal community types linked to opportunistic pathogen carriage and inflammation.
Authors: Schmidt NS; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany., Dörner E; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany., Podlesny D; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.; European Molecular Biology Laboratory (EMBL), Molecular Systems Biology Unit, Heidelberg, Germany., Bohlhammer E; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany., Bubeck AM; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany., Ruple HK; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany., Tetzlaff-Lelleck V; Institute of Nutritional Medicine, University of Lübeck and University Medical Center Schleswig-Holstein, Lübeck, Germany., Sina C; Institute of Nutritional Medicine, University of Lübeck and University Medical Center Schleswig-Holstein, Lübeck, Germany., Schmidt H; Department of Food Microbiology and Hygiene, University of Hohenheim, Stuttgart, Germany., Fricke WF; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, USA.
Source: Gut microbes [Gut Microbes] 2025 Dec; Vol. 17 (1), pp. 2539452. Date of Electronic Publication: 2025 Aug 01.
Publication Type: Journal Article
Journal Info: Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101495343 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1949-0984 (Electronic) Linking ISSN: 19490976 NLM ISO Abbreviation: Gut Microbes Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Contamination-controlled upper gastrointestinal microbiota profiling reveals salivary-duodenal community types linked to opportunistic pathogen carriage and inflammation.
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  Data: <searchLink fieldCode="AU" term="%22Schmidt+NS%22">Schmidt NS</searchLink>; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.<br /><searchLink fieldCode="AU" term="%22Dörner+E%22">Dörner E</searchLink>; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.<br /><searchLink fieldCode="AU" term="%22Podlesny+D%22">Podlesny D</searchLink>; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.; European Molecular Biology Laboratory (EMBL), Molecular Systems Biology Unit, Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Bohlhammer+E%22">Bohlhammer E</searchLink>; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.<br /><searchLink fieldCode="AU" term="%22Bubeck+AM%22">Bubeck AM</searchLink>; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.<br /><searchLink fieldCode="AU" term="%22Ruple+HK%22">Ruple HK</searchLink>; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.<br /><searchLink fieldCode="AU" term="%22Tetzlaff-Lelleck+V%22">Tetzlaff-Lelleck V</searchLink>; Institute of Nutritional Medicine, University of Lübeck and University Medical Center Schleswig-Holstein, Lübeck, Germany.<br /><searchLink fieldCode="AU" term="%22Sina+C%22">Sina C</searchLink>; Institute of Nutritional Medicine, University of Lübeck and University Medical Center Schleswig-Holstein, Lübeck, Germany.<br /><searchLink fieldCode="AU" term="%22Schmidt+H%22">Schmidt H</searchLink>; Department of Food Microbiology and Hygiene, University of Hohenheim, Stuttgart, Germany.<br /><searchLink fieldCode="AU" term="%22Fricke+WF%22">Fricke WF</searchLink>; Department of Microbiome Research and Applied Bioinformatics, University of Hohenheim, Stuttgart, Germany.; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, USA.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Taylor+%26+Francis%22">Taylor & Francis </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>101495343 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1949-0984 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2219490976%22">19490976 </searchLink><i>NLM ISO Abbreviation: </i>Gut Microbes <i>Subsets: </i>MEDLINE
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              Text: 2025 Dec
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