Novel Predictive Spatial Biomarker in Non-Small Cell Lung Carcinoma: The Diversity of Niches Unlocking Treatment Sensitivity (DONUTS).
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| Title: | Novel Predictive Spatial Biomarker in Non-Small Cell Lung Carcinoma: The Diversity of Niches Unlocking Treatment Sensitivity (DONUTS). |
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| Authors: | Cottrell TR; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Roskes JS; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; The Institute for Data Intensive Engineering and Science, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA., Fotheringham M; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Cohen E; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Zhang B; Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA., Engle LL; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA., Wang D; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA., Will E; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA., Sunshine JC; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA., Jimenez-Sanchez D; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA., Zeng Z; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA., Caushi JX; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA., Zhang J; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA., D'Amiano NM; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA., Deutsch JS; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA., Uttam S; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Pirie K; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Vlaminck D; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Mataj M; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Radwan E; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Fiorante A; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Espinosa N; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Popa T; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada., Ogurtsova A; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA., Soto-Diaz S; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA., Eminizer M; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; Data Science and AI Institute, Johns Hopkins University, Baltimore, MD, USA., Tabrisky S; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; The Institute for Data Intensive Engineering and Science, Johns Hopkins University, Baltimore, MD, USA., Jorquera A; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA., Skidmore J; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA., Medvedev D; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA., Chaft JE; Department of Medicine, Memorial Sloan Kettering Cancer Center and Weill Cornell Medical College, New York, NY, USA., Brahmer JR; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA., Conroy M; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA., Reuss JE; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA., Danilova L; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA., Ji H; Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA., Forde PM; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA., Pardoll DM; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA., Smith KN; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA., Green BF; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA., Szalay AS; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; The Institute for Data Intensive Engineering and Science, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA., Taube JM; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA. |
| Source: | BioRxiv : the preprint server for biology [bioRxiv] 2025 Sep 24. Date of Electronic Publication: 2025 Sep 24. |
| Publication Type: | Journal Article; Preprint |
| Journal Info: | Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 40832222 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Novel Predictive Spatial Biomarker in Non-Small Cell Lung Carcinoma: The Diversity of Niches Unlocking Treatment Sensitivity (DONUTS). – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Cottrell+TR%22">Cottrell TR</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Roskes+JS%22">Roskes JS</searchLink>; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; The Institute for Data Intensive Engineering and Science, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Fotheringham+M%22">Fotheringham M</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Cohen+E%22">Cohen E</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Zhang+B%22">Zhang B</searchLink>; Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Engle+LL%22">Engle LL</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Wang+D%22">Wang D</searchLink>; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Will+E%22">Will E</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Sunshine+JC%22">Sunshine JC</searchLink>; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Jimenez-Sanchez+D%22">Jimenez-Sanchez D</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Zeng+Z%22">Zeng Z</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Caushi+JX%22">Caushi JX</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+J%22">Zhang J</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22D'Amiano+NM%22">D'Amiano NM</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Deutsch+JS%22">Deutsch JS</searchLink>; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Uttam+S%22">Uttam S</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Pirie+K%22">Pirie K</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Vlaminck+D%22">Vlaminck D</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Mataj+M%22">Mataj M</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Radwan+E%22">Radwan E</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Fiorante+A%22">Fiorante A</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Espinosa+N%22">Espinosa N</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Popa+T%22">Popa T</searchLink>; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Ogurtsova+A%22">Ogurtsova A</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Soto-Diaz+S%22">Soto-Diaz S</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Eminizer+M%22">Eminizer M</searchLink>; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; Data Science and AI Institute, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Tabrisky+S%22">Tabrisky S</searchLink>; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; The Institute for Data Intensive Engineering and Science, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Jorquera+A%22">Jorquera A</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Skidmore+J%22">Skidmore J</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Medvedev+D%22">Medvedev D</searchLink>; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Chaft+JE%22">Chaft JE</searchLink>; Department of Medicine, Memorial Sloan Kettering Cancer Center and Weill Cornell Medical College, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Brahmer+JR%22">Brahmer JR</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Conroy+M%22">Conroy M</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Reuss+JE%22">Reuss JE</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Danilova+L%22">Danilova L</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Ji+H%22">Ji H</searchLink>; Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Forde+PM%22">Forde PM</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Pardoll+DM%22">Pardoll DM</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Smith+KN%22">Smith KN</searchLink>; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Green+BF%22">Green BF</searchLink>; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Szalay+AS%22">Szalay AS</searchLink>; Department of Physics & Astronomy, Johns Hopkins University, Baltimore, MD, USA.; The Institute for Data Intensive Engineering and Science, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Taube+JM%22">Taube JM</searchLink>; Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.; Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA.; Department of Dermatology, Johns Hopkins University, Baltimore, MD, USA.; The Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University, Baltimore, MD, USA.; The Mark Foundation for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD, USA. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22101680187%22">BioRxiv : the preprint server for biology</searchLink> [bioRxiv] 2025 Sep 24. <i>Date of Electronic Publication: </i>2025 Sep 24. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article; Preprint – Name: TitleSource Label: Journal Info Group: Src Data: <i>Country of Publication: </i>United States <i>NLM ID: </i>101680187 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2692-8205 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226928205%22">26928205 </searchLink><i>NLM ISO Abbreviation: </i>bioRxiv <i>Subsets: </i>PubMed not MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=40832222 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1101/2025.08.13.665980 Languages: – Code: eng Text: English Titles: – TitleFull: Novel Predictive Spatial Biomarker in Non-Small Cell Lung Carcinoma: The Diversity of Niches Unlocking Treatment Sensitivity (DONUTS). Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Cottrell TR – PersonEntity: Name: NameFull: Roskes JS – PersonEntity: Name: NameFull: Fotheringham M – PersonEntity: Name: NameFull: Cohen E – PersonEntity: Name: NameFull: Zhang B – PersonEntity: Name: NameFull: Engle LL – PersonEntity: Name: NameFull: Wang D – PersonEntity: Name: NameFull: Will E – PersonEntity: Name: NameFull: Sunshine JC – PersonEntity: Name: NameFull: Jimenez-Sanchez D – PersonEntity: Name: NameFull: Zeng Z – PersonEntity: Name: NameFull: Caushi JX – PersonEntity: Name: NameFull: Zhang J – PersonEntity: Name: NameFull: D'Amiano NM – PersonEntity: Name: NameFull: Deutsch JS – PersonEntity: Name: NameFull: Uttam S – PersonEntity: Name: NameFull: Pirie K – PersonEntity: Name: NameFull: Vlaminck D – PersonEntity: Name: NameFull: Mataj M – PersonEntity: Name: NameFull: Radwan E – PersonEntity: Name: NameFull: Fiorante A – PersonEntity: Name: NameFull: Espinosa N – PersonEntity: Name: NameFull: Popa T – PersonEntity: Name: NameFull: Ogurtsova A – PersonEntity: Name: NameFull: Soto-Diaz S – PersonEntity: Name: NameFull: Eminizer M – PersonEntity: Name: NameFull: Tabrisky S – PersonEntity: Name: NameFull: Jorquera A – PersonEntity: Name: NameFull: Skidmore J – PersonEntity: Name: NameFull: Medvedev D – PersonEntity: Name: NameFull: Chaft JE – PersonEntity: Name: NameFull: Brahmer JR – PersonEntity: Name: NameFull: Conroy M – PersonEntity: Name: NameFull: Reuss JE – PersonEntity: Name: NameFull: Danilova L – PersonEntity: Name: NameFull: Ji H – PersonEntity: Name: NameFull: Forde PM – PersonEntity: Name: NameFull: Pardoll DM – PersonEntity: Name: NameFull: Smith KN – PersonEntity: Name: NameFull: Green BF – PersonEntity: Name: NameFull: Szalay AS – PersonEntity: Name: NameFull: Taube JM IsPartOfRelationships: – BibEntity: Dates: – D: 24 M: 09 Text: 2025 Sep 24 Type: published Y: 2025 Identifiers: – Type: issn-electronic Value: 2692-8205 Titles: – TitleFull: BioRxiv : the preprint server for biology Type: main |
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