SynapseNet: Deep learning for automatic synapse reconstruction.

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Title: SynapseNet: Deep learning for automatic synapse reconstruction.
Authors: Muth S; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany., Moschref F; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany., Freckmann L; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany., Mutschall S; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany., Hojas-Garcia-Plaza I; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany., Bahr JN; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.; Göttingen Graduate Center for Neurosciences, Biophysics and Molecular Biosciences (GGNB), University of Göttingen, 37077 Göttingen, Germany., Petrovic A; Institute for Neuropathology, University Medical Center Göttingen, 37075 Göttingen, Germany., Do TT; Institute for Neuropathology, University Medical Center Göttingen, 37075 Göttingen, Germany., Schwarze V; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany., Archit A; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany., Weyand K; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany., Michanski S; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.; Auditory Neuroscience and Synaptic Nanophysiology Group, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany., Maus L; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany., Imig C; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany., Hintze A; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany., Brose N; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany., Wichmann C; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany., Fernandez-Busnadiego R; Institute for Neuropathology, University Medical Center Göttingen, 37075 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.; Faculty of Physics, Georg-August-Universitat Göttingen, 37077 Göttingen, Germany., Moser T; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Auditory Neuroscience and Synaptic Nanophysiology Group, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany., Rizzoli SO; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.; Department of Neuro-and-Sensory Physiology, University Medical Center Göttingen, 37073 Göttingen, Germany., Cooper BH; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany., Pape C; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.
Source: Molecular biology of the cell [Mol Biol Cell] 2025 Oct 01; Vol. 36 (10), pp. ar127. Date of Electronic Publication: 2025 Aug 28.
Publication Type: Journal Article
Journal Info: Publisher: American Society for Cell Biology Country of Publication: United States NLM ID: 9201390 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1939-4586 (Electronic) Linking ISSN: 10591524 NLM ISO Abbreviation: Mol Biol Cell Subsets: MEDLINE
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  Data: SynapseNet: Deep learning for automatic synapse reconstruction.
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  Data: <searchLink fieldCode="AU" term="%22Muth+S%22">Muth S</searchLink>; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Moschref+F%22">Moschref F</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Freckmann+L%22">Freckmann L</searchLink>; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Mutschall+S%22">Mutschall S</searchLink>; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Hojas-Garcia-Plaza+I%22">Hojas-Garcia-Plaza I</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Bahr+JN%22">Bahr JN</searchLink>; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.; Göttingen Graduate Center for Neurosciences, Biophysics and Molecular Biosciences (GGNB), University of Göttingen, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Petrovic+A%22">Petrovic A</searchLink>; Institute for Neuropathology, University Medical Center Göttingen, 37075 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Do+TT%22">Do TT</searchLink>; Institute for Neuropathology, University Medical Center Göttingen, 37075 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Schwarze+V%22">Schwarze V</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Archit+A%22">Archit A</searchLink>; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Weyand+K%22">Weyand K</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Michanski+S%22">Michanski S</searchLink>; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.; Auditory Neuroscience and Synaptic Nanophysiology Group, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Maus+L%22">Maus L</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Imig+C%22">Imig C</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Hintze+A%22">Hintze A</searchLink>; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Brose+N%22">Brose N</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Wichmann+C%22">Wichmann C</searchLink>; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Fernandez-Busnadiego+R%22">Fernandez-Busnadiego R</searchLink>; Institute for Neuropathology, University Medical Center Göttingen, 37075 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.; Faculty of Physics, Georg-August-Universitat Göttingen, 37077 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Moser+T%22">Moser T</searchLink>; Institute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, 37075 Göttingen, Germany.; Auditory Neuroscience and Synaptic Nanophysiology Group, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Rizzoli+SO%22">Rizzoli SO</searchLink>; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Collaborative Research Center 1690 (CRC1690), University of Göttingen, 37075 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.; Department of Neuro-and-Sensory Physiology, University Medical Center Göttingen, 37073 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Cooper+BH%22">Cooper BH</searchLink>; Department of Molecular Neurobiology, Max-Planck-Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.<br /><searchLink fieldCode="AU" term="%22Pape+C%22">Pape C</searchLink>; Institute of Computer Science, Georg-August-Universität Göttingen, 37077 Göttingen, Germany.; Collaborative Research Center 1286 (CRC1286), University of Göttingen, 37073 Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, 37075 Göttingen, Germany.
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