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Microbiome and resistome characterization of patients colonized with carbapenem-resistant Enterobacterales by long-read metagenomic next-generation sequencing of rectal swabs.

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Title: Microbiome and resistome characterization of patients colonized with carbapenem-resistant Enterobacterales by long-read metagenomic next-generation sequencing of rectal swabs.
Authors: Fissel JA; TriCore Reference Laboratories, Albuquerque, NM, USA., Bergman Y; Division of Medical Microbiology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA., Campodónico VL; Division of Medical Microbiology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Maryland Department of Health Laboratories Administration, Baltimore, MD, USA., Walsh DM; Cmbio, Germantown, MD, USA., Fanelli B; Cmbio, Germantown, MD, USA., Arogyaswamy K; Cmbio, Germantown, MD, USA., Kwon JH; Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA., Milstone AM; Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA., Tamma PD; Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA., Simner PJ; Division of Medical Microbiology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
Source: JAC-antimicrobial resistance [JAC Antimicrob Resist] 2025 Aug 28; Vol. 7 (4), pp. dlaf152. Date of Electronic Publication: 2025 Aug 28 (Print Publication: 2025).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101765283 Publication Model: eCollection Cited Medium: Internet ISSN: 2632-1823 (Electronic) Linking ISSN: 26321823 NLM ISO Abbreviation: JAC Antimicrob Resist Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: Microbiome and resistome characterization of patients colonized with carbapenem-resistant Enterobacterales by long-read metagenomic next-generation sequencing of rectal swabs.
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  Data: <searchLink fieldCode="AU" term="%22Fissel+JA%22">Fissel JA</searchLink>; TriCore Reference Laboratories, Albuquerque, NM, USA.<br /><searchLink fieldCode="AU" term="%22Bergman+Y%22">Bergman Y</searchLink>; Division of Medical Microbiology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Campodónico+VL%22">Campodónico VL</searchLink>; Division of Medical Microbiology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Maryland Department of Health Laboratories Administration, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Walsh+DM%22">Walsh DM</searchLink>; Cmbio, Germantown, MD, USA.<br /><searchLink fieldCode="AU" term="%22Fanelli+B%22">Fanelli B</searchLink>; Cmbio, Germantown, MD, USA.<br /><searchLink fieldCode="AU" term="%22Arogyaswamy+K%22">Arogyaswamy K</searchLink>; Cmbio, Germantown, MD, USA.<br /><searchLink fieldCode="AU" term="%22Kwon+JH%22">Kwon JH</searchLink>; Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.<br /><searchLink fieldCode="AU" term="%22Milstone+AM%22">Milstone AM</searchLink>; Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Tamma+PD%22">Tamma PD</searchLink>; Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Simner+PJ%22">Simner PJ</searchLink>; Division of Medical Microbiology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
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  Data: <searchLink fieldCode="JN" term="%22101765283%22">JAC-antimicrobial resistance</searchLink> [JAC Antimicrob Resist] 2025 Aug 28; Vol. 7 (4), pp. dlaf152. <i>Date of Electronic Publication: </i>2025 Aug 28 (<i>Print Publication: </i>2025).
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Oxford+University+Press%22">Oxford University Press </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101765283 <i>Publication Model: </i>eCollection <i>Cited Medium: </i>Internet <i>ISSN: </i>2632-1823 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226321823%22">26321823 </searchLink><i>NLM ISO Abbreviation: </i>JAC Antimicrob Resist <i>Subsets: </i>PubMed not MEDLINE
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              Text: 2025 Aug 28
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