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Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave.

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Title: Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave.
Authors: Lambisia AW; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya. alambisia@kemri-wellcome.org., Katama EN; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Moraa E; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Mwita JM; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Gallagher K; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Department of Infectious Diseases Epidemiology, London, School of Hygiene and Tropical Medicine , Keppel Street, London, UK., Mutunga M; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Nyale E; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Omungala J; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Mwanga M; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Murunga N; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Nyiro J; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Nyagwange J; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Sande C; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK., Bejon P; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK., Githinji G; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Pwani University, Kilifi, Kenya., Dellicour S; Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Brussels, Belgium.; Department of Microbiology, Immunology and Transplantation, Rega Institute & Laboratory for Clinical and Epidemiological Virology, University of Leuven, Louvain, KULeuven, , Belgium., Phan MVT; College of Health Solutions, Arizona State University, Phoenix, AZ, USA., Cotten M; College of Health Solutions, Arizona State University, Phoenix, AZ, USA.; Complex Adaptive System Initiative, Arizona State University, Scottsdale, AZ, USA., Ochola-Oyier LI; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK., Holmes EC; School of Medical Sciences, University of Sydney, Sydney, Australia., Agoti CN; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Pwani University, Kilifi, Kenya.
Source: BMC global and public health [BMC Glob Public Health] 2025 Sep 09; Vol. 3 (1), pp. 80. Date of Electronic Publication: 2025 Sep 09.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 9918715987606676 Publication Model: Electronic Cited Medium: Internet ISSN: 2731-913X (Electronic) Linking ISSN: 2731913X NLM ISO Abbreviation: BMC Glob Public Health Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave.
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  Data: <searchLink fieldCode="AU" term="%22Lambisia+AW%22">Lambisia AW</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya. alambisia@kemri-wellcome.org.<br /><searchLink fieldCode="AU" term="%22Katama+EN%22">Katama EN</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Moraa+E%22">Moraa E</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Mwita+JM%22">Mwita JM</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Gallagher+K%22">Gallagher K</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Department of Infectious Diseases Epidemiology, London, School of Hygiene and Tropical Medicine , Keppel Street, London, UK.<br /><searchLink fieldCode="AU" term="%22Mutunga+M%22">Mutunga M</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Nyale+E%22">Nyale E</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Omungala+J%22">Omungala J</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Mwanga+M%22">Mwanga M</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Murunga+N%22">Murunga N</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Nyiro+J%22">Nyiro J</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Nyagwange+J%22">Nyagwange J</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Sande+C%22">Sande C</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Bejon+P%22">Bejon P</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Githinji+G%22">Githinji G</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Pwani University, Kilifi, Kenya.<br /><searchLink fieldCode="AU" term="%22Dellicour+S%22">Dellicour S</searchLink>; Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Brussels, Belgium.; Department of Microbiology, Immunology and Transplantation, Rega Institute & Laboratory for Clinical and Epidemiological Virology, University of Leuven, Louvain, KULeuven, , Belgium.<br /><searchLink fieldCode="AU" term="%22Phan+MVT%22">Phan MVT</searchLink>; College of Health Solutions, Arizona State University, Phoenix, AZ, USA.<br /><searchLink fieldCode="AU" term="%22Cotten+M%22">Cotten M</searchLink>; College of Health Solutions, Arizona State University, Phoenix, AZ, USA.; Complex Adaptive System Initiative, Arizona State University, Scottsdale, AZ, USA.<br /><searchLink fieldCode="AU" term="%22Ochola-Oyier+LI%22">Ochola-Oyier LI</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Holmes+EC%22">Holmes EC</searchLink>; School of Medical Sciences, University of Sydney, Sydney, Australia.<br /><searchLink fieldCode="AU" term="%22Agoti+CN%22">Agoti CN</searchLink>; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Pwani University, Kilifi, Kenya.
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  Data: <searchLink fieldCode="JN" term="%229918715987606676%22">BMC global and public health</searchLink> [BMC Glob Public Health] 2025 Sep 09; Vol. 3 (1), pp. 80. <i>Date of Electronic Publication: </i>2025 Sep 09.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central+Ltd%22">BioMed Central Ltd </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>9918715987606676 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2731-913X (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%222731913X%22">2731913X </searchLink><i>NLM ISO Abbreviation: </i>BMC Glob Public Health <i>Subsets: </i>PubMed not MEDLINE
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