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Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence.

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Title: Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence.
Authors: Arantes LS; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany., Brown T; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany., De Panis D; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany., Whiting SD; Department of Biodiversity, Conservation and Attractions, Marine Science Program, Kensington, WA 6151, Australia., Young EJ; Conservation Medicine Program, Sc hool of Veterinary Medicine, Murdoch University, Murdoch, WA 6150, Australia., LaCasella EL; Marine Mammal and Turtle Division, Southwest Fisheries Science Center , National Marine Fisheries Service, National Oceanic and Atmospheric Administration, La Jolla, CA 92037, USA., Carvajal GA; Department of Biological Sciences, Florida Atlantic University, Boca Raton, FL 33431, USA., Kennedy A; Rescue and Rehabilitation Department, New England Aquarium, Quincy, MA 02169 , USA., Edmunds D; Animal Health Department, New England Aquarium, Quincy, MA 02169, USA., Bentley BP; Department of Biological Sciences, Smith College, Northampton, MA 01060, USA., Balacco J; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA., Whelan C; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA., Jain N; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA., Tilley T; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA., O'Toole B; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA., Traore P; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA., Jarvis ED; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA., Berry O; CSIRO Environomics Future Science Platform, Indian Ocean Marine Research Centre, Crawley, Western Australia 6009, Australia., Dutton PH; Marine Mammal and Turtle Division, Southwest Fisheries Science Center , National Marine Fisheries Service, National Oceanic and Atmospheric Administration, La Jolla, CA 92037, USA., Komoroske LM; Department of Environmental Conservation, University of Massachusetts Amherst, Amherst, MA 01003, USA., Mazzoni CJ; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany.
Source: GigaScience [Gigascience] 2025 Jan 06; Vol. 14.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN: 2047-217X (Electronic) Linking ISSN: 2047217X NLM ISO Abbreviation: Gigascience Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence.
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  Data: <searchLink fieldCode="AU" term="%22Arantes+LS%22">Arantes LS</searchLink>; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Brown+T%22">Brown T</searchLink>; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22De+Panis+D%22">De Panis D</searchLink>; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Whiting+SD%22">Whiting SD</searchLink>; Department of Biodiversity, Conservation and Attractions, Marine Science Program, Kensington, WA 6151, Australia.<br /><searchLink fieldCode="AU" term="%22Young+EJ%22">Young EJ</searchLink>; Conservation Medicine Program, Sc hool of Veterinary Medicine, Murdoch University, Murdoch, WA 6150, Australia.<br /><searchLink fieldCode="AU" term="%22LaCasella+EL%22">LaCasella EL</searchLink>; Marine Mammal and Turtle Division, Southwest Fisheries Science Center , National Marine Fisheries Service, National Oceanic and Atmospheric Administration, La Jolla, CA 92037, USA.<br /><searchLink fieldCode="AU" term="%22Carvajal+GA%22">Carvajal GA</searchLink>; Department of Biological Sciences, Florida Atlantic University, Boca Raton, FL 33431, USA.<br /><searchLink fieldCode="AU" term="%22Kennedy+A%22">Kennedy A</searchLink>; Rescue and Rehabilitation Department, New England Aquarium, Quincy, MA 02169 , USA.<br /><searchLink fieldCode="AU" term="%22Edmunds+D%22">Edmunds D</searchLink>; Animal Health Department, New England Aquarium, Quincy, MA 02169, USA.<br /><searchLink fieldCode="AU" term="%22Bentley+BP%22">Bentley BP</searchLink>; Department of Biological Sciences, Smith College, Northampton, MA 01060, USA.<br /><searchLink fieldCode="AU" term="%22Balacco+J%22">Balacco J</searchLink>; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA.<br /><searchLink fieldCode="AU" term="%22Whelan+C%22">Whelan C</searchLink>; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA.<br /><searchLink fieldCode="AU" term="%22Jain+N%22">Jain N</searchLink>; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA.<br /><searchLink fieldCode="AU" term="%22Tilley+T%22">Tilley T</searchLink>; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA.<br /><searchLink fieldCode="AU" term="%22O'Toole+B%22">O'Toole B</searchLink>; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA.<br /><searchLink fieldCode="AU" term="%22Traore+P%22">Traore P</searchLink>; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA.<br /><searchLink fieldCode="AU" term="%22Jarvis+ED%22">Jarvis ED</searchLink>; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10065, USA.<br /><searchLink fieldCode="AU" term="%22Berry+O%22">Berry O</searchLink>; CSIRO Environomics Future Science Platform, Indian Ocean Marine Research Centre, Crawley, Western Australia 6009, Australia.<br /><searchLink fieldCode="AU" term="%22Dutton+PH%22">Dutton PH</searchLink>; Marine Mammal and Turtle Division, Southwest Fisheries Science Center , National Marine Fisheries Service, National Oceanic and Atmospheric Administration, La Jolla, CA 92037, USA.<br /><searchLink fieldCode="AU" term="%22Komoroske+LM%22">Komoroske LM</searchLink>; Department of Environmental Conservation, University of Massachusetts Amherst, Amherst, MA 01003, USA.<br /><searchLink fieldCode="AU" term="%22Mazzoni+CJ%22">Mazzoni CJ</searchLink>; Department of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), 10315 Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research (BeGenDiv), 14195 Berlin, Germany.
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