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Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic.

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Title: Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic.
Authors: Park J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Cook DE; Google Inc., Mountain View, CA, USA., Chang PC; Google Inc., Mountain View, CA, USA., Kolesnikov A; Google Inc., Mountain View, CA, USA., Brambrink L; Google Inc., Mountain View, CA, USA., Mier JC; Google Inc., Mountain View, CA, USA., Gardner J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., McNulty B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Sacco S; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Keskus AG; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA., Bryant A; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA., Ahmad T; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA., Shetty J; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA., Zhao Y; Sequencing Facility Bioinformatics Group, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA., Tran B; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA., Narzisi G; New York Genome Center, New York, NY, USA., Helland A; New York Genome Center, New York, NY, USA., Yoo B; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Pushel I; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Lansdon LA; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Bi C; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Walter A; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Gibson M; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Pastinen T; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Reiman R; Translational Genomics Research Institute, Phoenix, AZ, USA., Mankame S; Translational Genomics Research Institute, Phoenix, AZ, USA., Ranallo-Benavidez TR; Translational Genomics Research Institute, Phoenix, AZ, USA., Brown C; City of Hope Beckman Research Institute and Medical Center, Duarte, CA, USA., Robine N; New York Genome Center, New York, NY, USA., Barthel FP; Translational Genomics Research Institute, Phoenix, AZ, USA., Farooqi MS; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA., Miga KH; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Carroll A; Google Inc., Mountain View, CA, USA. awcarroll@google.com., Kolmogorov M; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA. mikhail.kolmogorov@nih.gov., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA. bpaten@ucsc.edu., Shafin K; Google Inc., Mountain View, CA, USA. shafin@google.com.
Source: Nature biotechnology [Nat Biotechnol] 2025 Oct 16. Date of Electronic Publication: 2025 Oct 16.
Publication Type: Journal Article
Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE
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  Data: Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic.
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  Data: <searchLink fieldCode="AU" term="%22Park+J%22">Park J</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Cook+DE%22">Cook DE</searchLink>; Google Inc., Mountain View, CA, USA.<br /><searchLink fieldCode="AU" term="%22Chang+PC%22">Chang PC</searchLink>; Google Inc., Mountain View, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kolesnikov+A%22">Kolesnikov A</searchLink>; Google Inc., Mountain View, CA, USA.<br /><searchLink fieldCode="AU" term="%22Brambrink+L%22">Brambrink L</searchLink>; Google Inc., Mountain View, CA, USA.<br /><searchLink fieldCode="AU" term="%22Mier+JC%22">Mier JC</searchLink>; Google Inc., Mountain View, CA, USA.<br /><searchLink fieldCode="AU" term="%22Gardner+J%22">Gardner J</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22McNulty+B%22">McNulty B</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Sacco+S%22">Sacco S</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Keskus+AG%22">Keskus AG</searchLink>; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Bryant+A%22">Bryant A</searchLink>; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Ahmad+T%22">Ahmad T</searchLink>; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Shetty+J%22">Shetty J</searchLink>; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.<br /><searchLink fieldCode="AU" term="%22Zhao+Y%22">Zhao Y</searchLink>; Sequencing Facility Bioinformatics Group, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.<br /><searchLink fieldCode="AU" term="%22Tran+B%22">Tran B</searchLink>; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.<br /><searchLink fieldCode="AU" term="%22Narzisi+G%22">Narzisi G</searchLink>; New York Genome Center, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Helland+A%22">Helland A</searchLink>; New York Genome Center, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Yoo+B%22">Yoo B</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Pushel+I%22">Pushel I</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Lansdon+LA%22">Lansdon LA</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Bi+C%22">Bi C</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Walter+A%22">Walter A</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Gibson+M%22">Gibson M</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Pastinen+T%22">Pastinen T</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Reiman+R%22">Reiman R</searchLink>; Translational Genomics Research Institute, Phoenix, AZ, USA.<br /><searchLink fieldCode="AU" term="%22Mankame+S%22">Mankame S</searchLink>; Translational Genomics Research Institute, Phoenix, AZ, USA.<br /><searchLink fieldCode="AU" term="%22Ranallo-Benavidez+TR%22">Ranallo-Benavidez TR</searchLink>; Translational Genomics Research Institute, Phoenix, AZ, USA.<br /><searchLink fieldCode="AU" term="%22Brown+C%22">Brown C</searchLink>; City of Hope Beckman Research Institute and Medical Center, Duarte, CA, USA.<br /><searchLink fieldCode="AU" term="%22Robine+N%22">Robine N</searchLink>; New York Genome Center, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Barthel+FP%22">Barthel FP</searchLink>; Translational Genomics Research Institute, Phoenix, AZ, USA.<br /><searchLink fieldCode="AU" term="%22Farooqi+MS%22">Farooqi MS</searchLink>; Children's Mercy Hospital, University of Missouri-Kansas City School of Medicine, Kansas City, MO, USA.<br /><searchLink fieldCode="AU" term="%22Miga+KH%22">Miga KH</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Carroll+A%22">Carroll A</searchLink>; Google Inc., Mountain View, CA, USA. awcarroll@google.com.<br /><searchLink fieldCode="AU" term="%22Kolmogorov+M%22">Kolmogorov M</searchLink>; Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA. mikhail.kolmogorov@nih.gov.<br /><searchLink fieldCode="AU" term="%22Paten+B%22">Paten B</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA. bpaten@ucsc.edu.<br /><searchLink fieldCode="AU" term="%22Shafin+K%22">Shafin K</searchLink>; Google Inc., Mountain View, CA, USA. shafin@google.com.
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  Data: <searchLink fieldCode="JN" term="%229604648%22">Nature biotechnology</searchLink> [Nat Biotechnol] 2025 Oct 16. <i>Date of Electronic Publication: </i>2025 Oct 16.
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