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Enhancer activation from transposable elements in extrachromosomal DNA.

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Title: Enhancer activation from transposable elements in extrachromosomal DNA.
Authors: Kraft K; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Amgen Research, South San Francisco, CA, USA., Murphy SE; Department of Genetics, Stanford University, Stanford, CA, USA.; Department of Developmental Biology, Stanford University, Stanford, CA, USA.; Department of Cell Biology, Yale School of Medicine, New Haven, CT, USA.; Max Planck Institute For Molecular Genetics, Berlin, Germany., Jones MG; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Shi Q; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Amgen Research, South San Francisco, CA, USA., Bhargava-Shah A; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA., Luong C; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Department of Chemical and Systems Biology, Stanford University, Stanford, CA, USA., Hung KL; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Department of Neuroscience, Scripps Research, La Jolla, CA, USA., He BJ; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA., Li R; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA., Park SK; Stanford Cancer Institute, Stanford University, Stanford, CA, USA., Montgomery MT; Department of Genetics, Stanford University, Stanford, CA, USA.; Basic Science and Engineering Initiative, Stanford Children's Health, Betty Irene Moore Children's Heart Center, Stanford, CA, USA., Weiser NE; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA., Wang Y; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA., Luebeck J; Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA, USA., Bafna V; Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA, USA., Boeke JD; Institute for Systems Genetics, NYU Langone Health, New York, NY, USA., Mischel PS; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA., Boettiger AN; Department of Developmental Biology, Stanford University, Stanford, CA, USA., Chang HY; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA. howchang@stanford.edu.; Department of Genetics, Stanford University, Stanford, CA, USA. howchang@stanford.edu.; Amgen Research, South San Francisco, CA, USA. howchang@stanford.edu.
Source: Nature cell biology [Nat Cell Biol] 2025 Nov; Vol. 27 (11), pp. 1914-1924. Date of Electronic Publication: 2025 Oct 21.
Publication Type: Journal Article
Journal Info: Publisher: Macmillan Magazines Ltd Country of Publication: England NLM ID: 100890575 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4679 (Electronic) Linking ISSN: 14657392 NLM ISO Abbreviation: Nat Cell Biol Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Kraft+K%22">Kraft K</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Amgen Research, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Murphy+SE%22">Murphy SE</searchLink>; Department of Genetics, Stanford University, Stanford, CA, USA.; Department of Developmental Biology, Stanford University, Stanford, CA, USA.; Department of Cell Biology, Yale School of Medicine, New Haven, CT, USA.; Max Planck Institute For Molecular Genetics, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Jones+MG%22">Jones MG</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Shi+Q%22">Shi Q</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Amgen Research, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Bhargava-Shah+A%22">Bhargava-Shah A</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Luong+C%22">Luong C</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Department of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Hung+KL%22">Hung KL</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.; Department of Neuroscience, Scripps Research, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22He+BJ%22">He BJ</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Li+R%22">Li R</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Park+SK%22">Park SK</searchLink>; Stanford Cancer Institute, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Montgomery+MT%22">Montgomery MT</searchLink>; Department of Genetics, Stanford University, Stanford, CA, USA.; Basic Science and Engineering Initiative, Stanford Children's Health, Betty Irene Moore Children's Heart Center, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Weiser+NE%22">Weiser NE</searchLink>; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Wang+Y%22">Wang Y</searchLink>; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Luebeck+J%22">Luebeck J</searchLink>; Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Bafna+V%22">Bafna V</searchLink>; Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Boeke+JD%22">Boeke JD</searchLink>; Institute for Systems Genetics, NYU Langone Health, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Mischel+PS%22">Mischel PS</searchLink>; Sarafan ChEM-H Institute and Department of Pathology, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Boettiger+AN%22">Boettiger AN</searchLink>; Department of Developmental Biology, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Chang+HY%22">Chang HY</searchLink>; Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA. howchang@stanford.edu.; Department of Genetics, Stanford University, Stanford, CA, USA. howchang@stanford.edu.; Amgen Research, South San Francisco, CA, USA. howchang@stanford.edu.
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              Text: 2025 Nov
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