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Evaluating 12 automated, whole-genome sequencing analysis pipelines for Mycobacterium tuberculosis complex: a comparative study.

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Title: Evaluating 12 automated, whole-genome sequencing analysis pipelines for Mycobacterium tuberculosis complex: a comparative study.
Authors: Spies R; Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam; Nuffield Department of Medicine, University of Oxford, Oxford, UK. Electronic address: rspies@oucru.org., Crook DW; Nuffield Department of Medicine, University of Oxford, Oxford, UK; National Institute of Health Research Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK; Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, Oxford, UK., Peto TEA; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Fowler PW; Nuffield Department of Medicine, University of Oxford, Oxford, UK; National Institute of Health Research Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK; Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, Oxford, UK., Turner R; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Thai H; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Watson JA; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Walker TM; Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam; Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Source: The Lancet. Microbe [Lancet Microbe] 2025 Dec; Vol. 6 (12), pp. 101210. Date of Electronic Publication: 2025 Oct 21.
Publication Type: Journal Article; Comparative Study; Evaluation Study
Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101769019 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-5247 (Electronic) Linking ISSN: 26665247 NLM ISO Abbreviation: Lancet Microbe Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Evaluating 12 automated, whole-genome sequencing analysis pipelines for Mycobacterium tuberculosis complex: a comparative study.
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  Data: <searchLink fieldCode="AU" term="%22Spies+R%22">Spies R</searchLink>; Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam; Nuffield Department of Medicine, University of Oxford, Oxford, UK. Electronic address: rspies@oucru.org.<br /><searchLink fieldCode="AU" term="%22Crook+DW%22">Crook DW</searchLink>; Nuffield Department of Medicine, University of Oxford, Oxford, UK; National Institute of Health Research Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK; Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Peto+TEA%22">Peto TEA</searchLink>; Nuffield Department of Medicine, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Fowler+PW%22">Fowler PW</searchLink>; Nuffield Department of Medicine, University of Oxford, Oxford, UK; National Institute of Health Research Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK; Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Turner+R%22">Turner R</searchLink>; Nuffield Department of Medicine, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Thai+H%22">Thai H</searchLink>; Nuffield Department of Medicine, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Watson+JA%22">Watson JA</searchLink>; Nuffield Department of Medicine, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Walker+TM%22">Walker TM</searchLink>; Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam; Nuffield Department of Medicine, University of Oxford, Oxford, UK.
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  Data: <searchLink fieldCode="JN" term="%22101769019%22">The Lancet. Microbe</searchLink> [Lancet Microbe] 2025 Dec; Vol. 6 (12), pp. 101210. <i>Date of Electronic Publication: </i>2025 Oct 21.
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        Value: 10.1016/j.lanmic.2025.101210
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              Text: 2025 Dec
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