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Mapping chromatin structure at base-pair resolution unveils a unified model of cis-regulatory element interactions.

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Title: Mapping chromatin structure at base-pair resolution unveils a unified model of cis-regulatory element interactions.
Authors: Li H; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Dalgleish JLT; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK., Lister G; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Maristany MJ; Maxwell Centre, Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge CB3 0HE, UK; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK., Huertas J; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK; Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK., Dopico-Fernandez AM; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Hamley JC; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Denny N; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Bloye G; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Zhang W; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Hentges L; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK., Doll R; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Wei Y; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK., Maresca M; Division of Gene Regulation, the Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands., Dimitrova E; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Pytowski L; Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK; Pixel Biology Ltd., Oxford, UK., Tunnacliffe EAJ; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK., Kassouf M; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK., Higgs D; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK; Chinese Academy of Medical Sciences Oxford Institute, University of Oxford, Oxford OX3 7BN, UK., de Wit E; Division of Gene Regulation, the Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands., Klose RJ; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK., Schermelleh L; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK; Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK., Collepardo-Guevara R; Maxwell Centre, Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge CB3 0HE, UK; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK; Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK., Milne TA; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK., Davies JOJ; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK; National Institute of Health Research Blood and Transplant Research Unit in Precision Cellular Therapeutics, University of Oxford, Oxford OX3 9DU, UK; Oxford National Institute of Health Research Biomedical Research Centre, University of Oxford, Oxford OX3 9DU, UK. Electronic address: james.davies@imm.ox.ac.uk.
Source: Cell [Cell] 2025 Dec 11; Vol. 188 (25), pp. 7175-7193.e19. Date of Electronic Publication: 2025 Nov 05.
Publication Type: Journal Article
Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Li+H%22">Li H</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Dalgleish+JLT%22">Dalgleish JLT</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Lister+G%22">Lister G</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.<br /><searchLink fieldCode="AU" term="%22Maristany+MJ%22">Maristany MJ</searchLink>; Maxwell Centre, Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge CB3 0HE, UK; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK.<br /><searchLink fieldCode="AU" term="%22Huertas+J%22">Huertas J</searchLink>; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK; Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK.<br /><searchLink fieldCode="AU" term="%22Dopico-Fernandez+AM%22">Dopico-Fernandez AM</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Hamley+JC%22">Hamley JC</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Denny+N%22">Denny N</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Bloye+G%22">Bloye G</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Zhang+W%22">Zhang W</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Hentges+L%22">Hentges L</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Doll+R%22">Doll R</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Wei+Y%22">Wei Y</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Maresca+M%22">Maresca M</searchLink>; Division of Gene Regulation, the Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands.<br /><searchLink fieldCode="AU" term="%22Dimitrova+E%22">Dimitrova E</searchLink>; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.<br /><searchLink fieldCode="AU" term="%22Pytowski+L%22">Pytowski L</searchLink>; Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK; Pixel Biology Ltd., Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Tunnacliffe+EAJ%22">Tunnacliffe EAJ</searchLink>; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Kassouf+M%22">Kassouf M</searchLink>; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Higgs+D%22">Higgs D</searchLink>; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK; Chinese Academy of Medical Sciences Oxford Institute, University of Oxford, Oxford OX3 7BN, UK.<br /><searchLink fieldCode="AU" term="%22de+Wit+E%22">de Wit E</searchLink>; Division of Gene Regulation, the Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands.<br /><searchLink fieldCode="AU" term="%22Klose+RJ%22">Klose RJ</searchLink>; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.<br /><searchLink fieldCode="AU" term="%22Schermelleh+L%22">Schermelleh L</searchLink>; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK; Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK.<br /><searchLink fieldCode="AU" term="%22Collepardo-Guevara+R%22">Collepardo-Guevara R</searchLink>; Maxwell Centre, Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge CB3 0HE, UK; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK; Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK.<br /><searchLink fieldCode="AU" term="%22Milne+TA%22">Milne TA</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK.<br /><searchLink fieldCode="AU" term="%22Davies+JOJ%22">Davies JOJ</searchLink>; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK; MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK; National Institute of Health Research Blood and Transplant Research Unit in Precision Cellular Therapeutics, University of Oxford, Oxford OX3 9DU, UK; Oxford National Institute of Health Research Biomedical Research Centre, University of Oxford, Oxford OX3 9DU, UK. Electronic address: james.davies@imm.ox.ac.uk.
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